Array 1 1178604-1178370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012206.1 Campylobacter jejuni strain CJ067CC45 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1178603 36 97.2 30 .............................A...... GGCATTTTTTTGAATAAAACTAAACAAAAT 1178537 36 97.2 30 .............................A...... ATTGCAAAAGCTGAGAAAGATAAACAAAAT 1178471 36 100.0 30 .................................... AATCCTAAAGTAGAAGCTGAGGCTAGATTT 1178405 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTTTAGCCTATTATTAATTGTTTATATGGTAAAAT # Left flank : AGTTCTAAAAAAATTTTAGCAAATATAATAGATTAAAAAATATCATCATCGATGATTATTTTATAAACTTGATAGAACATACAATAGATGGTAATAAATTTGAATTTAGCCATGATATGAATTTAATCAAATATAAAGACTATGTAGCAAATTTAAACACTTTAGAGATTGCAGGACTACCGCAAGAGATGGAAAAGGTAGGAGATGAACTGATTTTGCCTGATTTTCCAAAAAGGCTAGATGAAAATCTTATAAGAGAGTTTCAAGCCCTGATAAAGTTAGTCTTTAGAAAGGATTGTAATAAAATTAAATTGTAGAAAACGCACTTTTTAACGAATAAACGCTCAGGTGAAGTGCTAAACCTTTATTTTAGCCTATTATTAATTGTTTTGTGAAATTGTAATATTCTTTTACTTAAAAAAATATTATATTTTTAAATAATACTTTATTAAATATTTGCATGAAAAAATAAATATAAAATATTATGCAATATGTTTGAA # Right flank : AGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTTCTTATTTTTTGAGCAAAAACTTACGCATACCCTTTTTTCATTTTTTGTTTCTTTAACTTCTCAAAAAAAATTTGTGCCTCATTAAAACTTGGAAATACATTATTTTTTATTCCTGTGCAACTTTTAAAACGCACATTTCCGTAAACTCTCTCAACCATATATTCCTCAAATAGAGTGGCAATAATTTCTATGCTATAATAGCGAATGTTTCCTTTCTCAGTTATTCTGTGCAACAAAACATTATTCATAAAAAAACCTAATTAAAAATTATTTATTTTATTCAAAAAATCATTTTTAAACATTTTTTCTATAGCAAGCTTAATCATTTGATTAATTTTCTCATTTTCTTTAGCTACATTAGAAATTTCATCTTTGTAAGCAGGAATCATCATTTCTATCATTTTTAATGTTTTTTCATCAAATAATACTCTTTTTGGAATTAATATTTCATTTTTTTGAATA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTATTAATTGTTTATATGGTAAAAT # Alternate repeat : GTTTTAGCCTATTATTAATTGTTTATATGATAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1469084-1469316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012206.1 Campylobacter jejuni strain CJ067CC45 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1469084 36 97.2 30 T................................... TGATTTATTAGTAACCCATCAAGTTGGCTT 1469150 36 100.0 30 .................................... TGCACTGAAATAAATGAGTTTATAGCAAAT 1469216 36 100.0 29 .................................... CTAAATAAAGTTTATTTATAGCTTTATCA 1469281 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : CGACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGCTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAATGTGGAATTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGTAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTAGTACCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCACCTCCTTTTAGTGAAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGGG # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAATTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //