Array 1 20188-21115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOF01000032.1 Pectobacterium odoriferum strain NCPPB 3841 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20188 28 100.0 32 ............................ AAATCGGCGTAGAAGATGCGCTTAACACTGTT 20248 28 100.0 32 ............................ ACAGCCCGTTAAAAATATTGGTTATCGAATCA 20308 28 100.0 32 ............................ AGGTCATACACCCCTTTACCGATGCCGGTTGT 20368 28 100.0 32 ............................ TATTCCCGATTTTCCTTCTCAACTCTGGCGGG 20428 28 100.0 32 ............................ TATCCCCTCCCGCAACGGCTGACGGACTTTGG 20488 28 100.0 32 ............................ GACGTGATCCGCCATTTCAGTGAACTTTGCAT 20548 28 100.0 32 ............................ TCGTAAAGACTACCAGCTTCCAGACGCTGGAC 20608 28 100.0 32 ............................ TCGATCGTGATTGGTGGATCGGTATCGCCGAA 20668 28 100.0 32 ............................ GGGATCGAATCGCTCCTCTGTAACTTCCACCC 20728 28 100.0 32 ............................ ATCAGTAAAGAGATCTGAACCACCAGATACAT 20788 28 100.0 32 ............................ ATAGAAACCAGTCTACGCCGCTGTCGTCTCGT 20848 28 100.0 32 ............................ CACTCGGCTCATACGCAGTGATCGAAGACTCT 20908 28 100.0 32 ............................ AGATATCCGTAGAAGGGTATTGGTCCCCCCTC 20968 28 100.0 32 ............................ AGTCTGTTACGGTTCGCAGCCAAACGGAATGG 21028 28 100.0 32 ............................ GCAGGCTACGCAGTTGTCCGTTGCAGCGACGA 21088 28 92.9 0 ....................T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTATATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGTTAACTACCGTAAAATATGAACG # Right flank : AATAAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28853-29059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOF01000032.1 Pectobacterium odoriferum strain NCPPB 3841 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28853 28 85.7 32 C.AAG....................... TGGGCAAACAGTCGATCACGCTCGATATAAGA 28913 28 100.0 32 ............................ ACATAGCCAGTAAGCACGCCTCGGGATCGGCT 28973 28 100.0 32 ............................ TGCAAATGTCAACTATCGGCGGAATGGAAGGG 29033 27 78.6 0 .............C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCTGATGAAACACATGGACAGTTCACTGCCTATCCGGCAGTGAACTGGTTTCTTCGTCGTCGATTTGAGATGACGTGTTTCTAAGCTGCCTATCCGGCAGTGAACCTATGTTGCAGTATGCGGCGGGTGAGCTTGATTTTCTAAGCTGCCTATCCGGCAGCTTAGAAAGGTACCGTCATTGCCCGGATAGACGTAGAACAGTTCACTGCCGTATAGGCAGTGAACTGAATGAGCCATCAGCGTGAATATTGATGACATTTCTAAGCTGCCTATCCGGCAGTGAACTACGGCTGGGGTGGCGCTGCAAAAACAGTTACTTTCTAAGCTGCCTATCCGGCAGTGAACACCAGGCACATGTGCACCAGCAGCCACAAGTTTTTCTAAGCTGCCTATCCGGCAGTGAACTCGGCATTGAAGGCTGAGAGTAACGCCGTGCCTTTCTAAGCTGCCTATCCGGCAGTGAACCTACAGCAGCGGCACCAGCGGAGGAAGCCCCGTTT # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGTGGAGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //