Array 1 640431-639923 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070865.1 Shewanella putrefaciens strain XY07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 640430 28 100.0 32 ............................ TCTGGATCAATATCAATATCTACTTCAGCAAA 640370 28 100.0 32 ............................ TAGAAGCGCATGCAGGCAATGGGTGAAGACAT 640310 28 100.0 32 ............................ AGAATCATAGCCTTCTACATTGTGCAGCGGAT 640250 28 100.0 32 ............................ TGCATCGTCATTAGCTGGCAATTCAGGCTTAG 640190 28 100.0 32 ............................ TGCCATATCGGCGGCGGCATCAATGTAATTTT 640130 28 100.0 32 ............................ ATTTTAGGAATAAATCATATATTTGTAGTTAA 640070 28 100.0 32 ............................ CAATTGAGATTACTTTGGCTGGTTGTCGAAAC 640010 28 100.0 32 ............................ AATCATCGACATTAATACCGATGAACTTTATG 639950 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGGGGTCTGCAGCGATAACCAATTTGTAGAACGCTATAACCAAGGGCATCAACAGTATCTCGTCAATAAGCGTTTGGCGGAAATCGCAGACCGTTTACACACTATTGATAGTGAGATCAGCAGTATTAATACCAAACTCAATAATCTCACCGATAAAGCCGACTTATTAAGGCAAAAAAATATCCTCTTAAATGAAAAAAATCATCTTCTAGATGAAAAAGCCCGCCTACGCCAAGGAAATATTGAGTTTAAATTTAGATTCTAACCATAAAAATCTAGCCATCCACAAAGCCAATTCAAAAGAGTAAACCCAAACAAAAATGTTAAAAGGAACAAGCCGTAAATAAGGCTATTTTAGGATGACTCACCCATACTTCTATTGCATTTAGAAATAAGCTATAAATACAAAAGGTTACAATAGATGATTTTTAAGAAGGTAAAAATACGTTTTTTATCCTAACTGCCTGTTGTAACTTTATTTTATTGATTTATTCTACA # Right flank : TCACCAACAATGCAAAACTGATCTACTTGTTTTCACTATCAAAGATGGGACATACCCAACTCTCTATGGATTAACAATCAAAACCGAGGTGACAGTATTTTACTCTTCCCTTCGAAATTGCCTCAGGGCATTTGCGTTCGTTGCGTGAGCGAGGCATGGTCATTCTCGTGCATATCTGGACCCATCCATTGCACTTCACAACATTCAGGCATCTTACCTATCAGATACCGAGATAGCGTCAGTCGAATCAGGGACGAGCAGTCCTTCTTGGTCGACTCTTGATTAAGAATAAGGAGGGAAAGCCCCACGACTTTTATTCACCTCGGCCGTAAGGCCGCAATGACTAACAATGTAGAAAGATGGGACACTCTAACCACCAGCAAAAGTATACGATGTTACACTTTTAGTAACTATTTCAGTGCTTAAATCTCAAAAAGTGTAGCTAAGTACACCTGAAACTTACCCAAGTCACCAGACCAAAAAACAAAACCCCAATTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1986257-1989227 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070865.1 Shewanella putrefaciens strain XY07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1986257 28 100.0 32 ............................ AGTCACGAAAGCTGCTACAGGCCACGCATAGC 1986317 28 100.0 32 ............................ TTCACGGATAGAGAAGGCTTCTCTTAACAATC 1986377 28 100.0 32 ............................ TCTGAGATTACTCTAATTTGCGGTACTGAAGT 1986437 28 100.0 32 ............................ ACATTGACGTCTAAGCCACTTGGTTTTAGCTT 1986497 28 100.0 32 ............................ CACCAGTGCAATAAGAGTTTCCTCAGCCGAAA 1986557 28 100.0 32 ............................ TTATATGGTTCGTTCTTTAACTACTGGTAAAA 1986617 28 100.0 32 ............................ ATGCAGCTAATCCCGCAATGCACCATGTGATC 1986677 28 100.0 32 ............................ TCAGACAGATAGGAAAAAATCAGTTCGTTGGT 1986737 28 100.0 32 ............................ TCTAAGTCATTGAATACCATTGCTTATCTTGT 1986797 28 100.0 32 ............................ AATCGCATTTTCAACATCACGCATACGCAAAA 1986857 28 100.0 32 ............................ TATCAAAGTCGGGCATCACAGCGAAAGTCGTC 1986917 28 100.0 32 ............................ ATTAGTAACATAGGTGTCACCAAGCCACGCCA 1986977 28 96.4 32 ..........G................. GAGGTACGATGCCGAAGGTTTTAACGAAAAAC 1987037 28 100.0 32 ............................ GTCAAGTAAAAATAAGACTGCACCAAACAAAT 1987097 28 100.0 32 ............................ CAGCCTTTAGGCCGCAGAACATGGACTAATCC 1987157 28 100.0 32 ............................ AACAACTCAGAACTAGGATTTTTAAAATCAGA 1987217 28 100.0 32 ............................ TTCACCCTCAATATCGCGGTCAAAGGCTTCTA 1987277 28 100.0 32 ............................ AGTACCCCTTCCATTATCAAATTCCCGCAAGC 1987337 28 100.0 32 ............................ TTTGCGCCAGAAAGCACGAGATTTATAGATAA 1987397 28 100.0 32 ............................ ATCGGGGCAATCATACCCCGACGGGGATGTTG 1987457 28 100.0 32 ............................ TTCGTGCGGAGCTGGGCTAGGTTTTGGGGCTC 1987517 28 100.0 32 ............................ TTTATTCCCGCCGTGAGCATTTCCCTGTAGCC 1987577 28 100.0 32 ............................ AACAGGAAGTATTCCTTGGTGAACGTAATCGC 1987637 28 100.0 32 ............................ GTTGGAGGACACACCTTTGATAAATCAACTGT 1987697 28 100.0 32 ............................ TTTTGGCAAGTCCCAATCATAGATTGGATCTT 1987757 28 100.0 32 ............................ TTAACCCCGGTTCGCAAGATTCAGCATACGTA 1987817 28 100.0 32 ............................ CGATTGGTTAACATCACCGGTTAGTGATTTTT 1987877 28 100.0 32 ............................ ATTTTGTACGTTTCGGTCGTGTCAGGGAAGTC 1987937 28 100.0 33 ............................ TTCCGTGCCGATAGCCGCTTCGAACGTTCCGAT 1987998 28 100.0 32 ............................ TATAAGCGCACCCATCTTTAGGGGTTTCAGGC 1988058 28 100.0 32 ............................ ATTGCAAAAAGAGATCAGCGACAACATAACGT 1988118 28 100.0 32 ............................ TGCCAGCCCTGAAACCACAATAGACTATGTTG 1988178 28 100.0 32 ............................ ACTGACTTCTGGCGTGGATATTAGTTTTTTAA 1988238 28 100.0 32 ............................ TGGTAGGAGTAAGGCTTTAATATTATTAGTAA 1988298 28 96.4 32 ..........G................. ATCGCCCGTGATAGCATCAACAGCGGCACTAA 1988358 28 96.4 32 ..........G................. TATAGCATTTTCTACATCACGCATTCTAAGAA 1988418 28 96.4 32 ..........G................. TTGCGATATTAATAACCGCATATAATCTGCTA 1988478 28 96.4 32 ..........G................. TTGGCGATTCTGGTAATGCTCGGTTAAGGCGA 1988538 28 96.4 32 ..........G................. GCATCGATAACGATGCTTGGCTCTGCTGGTGC 1988598 28 96.4 32 ..........G................. ATTAGAAGAATTATAATGATTAGTGAACTGTT 1988658 28 96.4 32 ..........G................. TGTTGAGGCTGGCGAGTCTGTTACAGCTAAAC 1988718 28 96.4 32 ..........G................. GCTCCGCTAAACATCAAGGGGATAAATCCCCT 1988778 28 96.4 32 ..........G................. CAGATGACAATTTCGCACGCTATTCAACTTAA 1988838 28 96.4 32 ..........G................. TCAATTACAACGCTTGGATTATCCATGTTTCG 1988898 28 96.4 32 ..........G................. TGAGTCGGTTTCATCATTAATTTCATCTAATT 1988958 28 96.4 32 ..........G................. GTCATCTGAAATCTGTGACTTCTTGACGTTTG 1989018 28 96.4 32 ..........G................. TTGGAGTTGGTGATGATTTTGAAGTGAACTCT 1989078 28 100.0 32 ............................ ATAGCTCAAAGCCAGCATGCCACTCTGCATTA 1989138 28 92.9 32 ..........G..............C.. TTCGTCATCAAACTTAAGCTGGATAGCCTGAG 1989198 28 85.7 0 ..........G...T.....T.....T. | TG [1989220] ========== ====== ====== ====== ============================ ================================= ================== 50 28 98.6 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGATATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCATTTATCAACTTGCGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : ATAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCTGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGATTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCTAAAGGTAATTTGGTGATTGAGGCGGGCACGGGGGTTGGAAAAACCTTTGCCTATTTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //