Array 1 1292363-1288166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007031.1 Marichromatium purpuratum 984 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 1292362 28 100.0 36 ............................ ATCCGCGTCAAGGCTTAAGCCTGCTGGGGGCCGTTG 1292298 28 100.0 37 ............................ TTCGAAGTGTTCGCGCAGATCCCCGCGAATGCGGCAA 1292233 28 100.0 36 ............................ GAGTCGGCGTCGCTGAGATCGCGCAGATAGCGCGGC 1292169 28 100.0 35 ............................ ACCGTCGACTTGGCCCGGCGGCGCTCGGTCTCCAG 1292106 28 100.0 36 ............................ ACTGGGCCAGTAGCGCCACAGCTCGTCGAGCACGAC 1292042 28 100.0 36 ............................ AGAGGAAATAGGCGGAGGCAATGGCGAATTAGTACA 1291978 28 100.0 36 ............................ AGCATCAGCGAATTCTTCGACGCCCTCCCGCTAATC 1291914 28 100.0 37 ............................ CCCTTGGGGCATCACGTAGAAACACCGCCCCCCGCCG 1291849 28 100.0 36 ............................ GCCAAGTCCGAGTTCAGCCGCGCCATGGCCCAGCAT 1291785 28 100.0 36 ............................ GGTGATGGATCCGGTGATGGTACCGGTGGAGATGGC 1291721 28 100.0 36 ............................ GGCGGCGATACCGGCGGTAGCTCCGGCGGCACTGAT 1291657 28 100.0 36 ............................ CCGGCGGACCGCCGCGCGGTTGCAACGCCGCGGCGG 1291593 28 100.0 36 ............................ CCGGCGGACCGCCGCGCGGTTGCAACGCCGCGGCGG 1291529 28 100.0 36 ............................ CCGGCGGACCGCCGCGCGGTTGCAACGCCGCGGCGG 1291465 28 100.0 36 ............................ GCCACCGGCATAGCCGAGGAGCAAAACATGCTCGCA 1291401 28 100.0 36 ............................ CGCTCAGCGTAGCGGGCAAAGCGATCATCTGCATCG 1291337 28 100.0 36 ............................ CCTAGGATTTGAGTTGCGACACACAAATCACGTAGG 1291273 28 100.0 36 ............................ ACTCCATGCGCGGCGCCTTGGGTGGCTCAGGCTCGG 1291209 28 100.0 36 ............................ TGACCAGATCCGCATTGCCCTGTCACAATGCGGCCC 1291145 28 100.0 36 ............................ CAGCGCGACAGATAGCCGCCGGATTGCCCTCCACGG 1291081 28 100.0 36 ............................ AATGGATCCGCTCCATGTGCGGGCCGATGTCACCCG 1291017 28 100.0 36 ............................ ACCGGCGCCTCGGCGCTGGCGGTCAGCGGCACGGGT 1290953 28 100.0 42 ............................ AATGACGCACGCGCCCGAAGCCCGCGCCGACTCGGCCGCCGA 1290883 28 100.0 36 ............................ CAGGGCACTCGTGAGGAGCAGCGCGCCCGGGGTCGG 1290819 28 100.0 36 ............................ ACACTCAGACGCCAACTGAGCATCGATCTCCCACTC 1290755 28 100.0 36 ............................ AGTACATCATCAATCTGCTGCACAAGGGCGAGACGG 1290691 28 100.0 37 ............................ TCAATAAGTAGTTGCGGCTCACGCCGCTTTGTTGGTA 1290626 28 100.0 36 ............................ AGCCACGGCGGGCACAGAGAACGCAATGCGACGTCC 1290562 28 100.0 36 ............................ CCACGCGCCGAGGCTTGACCCAAGCGGCCCCGTCAC 1290498 28 100.0 36 ............................ CCGGCGATGTCGGGCCGGTCCTGCAACTCGAGATAG 1290434 28 100.0 36 ............................ GCGATTGCCGCGGTCATCAAGGATCTCTTCAAGGCC 1290370 28 100.0 36 ............................ ACCGAGATGGTGATCTCGCGGCCGTGTTGGAGGCCA 1290306 28 100.0 36 ............................ AGATACCCGATCAGGTCCAGATCCACGTCCTCATCC 1290242 28 100.0 36 ............................ GCCGCCGACAAACGCACTCATGGCGTCTCATCCGAA 1290178 28 100.0 36 ............................ AGACCGTGCTCGAGCACATAGGCGGCGATGGCCAGG 1290114 28 100.0 36 ............................ AGACCGGGCTCATTGCTCTTGACAAACCCGCCGCAG 1290050 28 100.0 35 ............................ ATGCAGGGCTGCAGCATCGCCAACGGAAACACCGA 1289987 28 100.0 36 ............................ ATTTTCCATAGTGTCAGATTCCGCTTTTTTGTTGTG 1289923 28 100.0 37 ............................ ACCTCGCGCGGCTGCATCTGGCGACGCGGCGAAATAT 1289858 28 100.0 36 ............................ GGGAAGTCGCTGGTGGTCTGGAAGGCCCGCCCGACC 1289794 28 100.0 36 ............................ GCAGCGAAGTACCGGTCCTGCGCCCGCTCCAACGAC 1289730 28 100.0 36 ............................ GAGATCTCCGCGCCCTCTTTCGGTGTGCCGGCGCTC 1289666 28 100.0 36 ............................ CTGGCCCGAGTCGATGGCCACCACCCCGCAGACCTC 1289602 28 100.0 36 ............................ TCGCCCACGAACGCCTGCATATAGGATTTGAACTGG 1289538 28 100.0 36 ............................ TCGCCGTTCAAAGTGCTGACGCCAAACACCCGGCCC 1289474 28 100.0 36 ............................ CTCATGTCGTCGGACCACCAGCCCCCTCGTCGAGGG 1289410 28 100.0 36 ............................ CACGCGGACTGTTGCTCGGTGAATGCAGATGCAGCC 1289346 28 100.0 36 ............................ GCTTTGCAGCAGTACCAGTACGCCGCCGATCAGGCC 1289282 28 100.0 36 ............................ TCGGTGAGGAGATAAGCGATGAAGAGCGCAATAGAC 1289218 28 100.0 36 ............................ ATCTCGATGACCTGATCGGGGATGCCGGGTAGCGCC 1289154 28 100.0 36 ............................ TCGAGGTCGGCCTCGCGCGTCAGCACGAGCTCGCCG 1289090 28 96.4 36 .......G.................... TCGTCGAGCAGTTCACCACCACACAGCCCGGGGCTC 1289026 28 100.0 36 ............................ AGCCATGCGGCACACGTGTGGCGCATGTCGTGGATC 1288962 28 100.0 36 ............................ AAGTCGGACACTCAGACATGCCGACGGATCTATGTA 1288898 28 100.0 36 ............................ TATGACCCGAAGAAGTACGGGGCGCGGGTATGGCTG 1288834 28 100.0 36 ............................ AGCGATCGAGGATCGATTGACACGGCGTGCGGCAAT 1288770 28 96.4 36 ...................A........ CCGCCGCCCTGGGCGGGGAATGCGTAGATCTCCTTG 1288706 28 100.0 36 ............................ TCGAATGGGATGCCGTGATGCACGCCCAACGGATAC 1288642 28 92.9 36 ...............G...........A GTCGATGAGCTGACGGTTGCCGCGAACGCCGTCCTG 1288578 28 100.0 36 ............................ CTAGCGCAAGCGCCGCCTAAGCGTGGCGCTCCCAGC 1288514 28 100.0 37 ............................ ACCACCCGCCACCCCGCTGCATCGCTCCTCCAGGCGG 1288449 28 96.4 36 ..............C............. TATCGGGAGGTTGAGGGCCTGCTCCACGGCCATCGG 1288385 28 100.0 36 ............................ GTGCTCACCGAGGCCGGCCACCGCCAGCTGGTGCAG 1288321 28 96.4 36 ..........T................. GCTGCCGGGTCTAACACTGGGAGATCCCCAGATCCT 1288257 28 85.7 36 ............G.C..A..A....... ATAGGTCGCGAGTCTTTTCCATTGCGTGATAGATGC 1288193 28 78.6 0 ............CTC.....A.A.C... | ========== ====== ====== ====== ============================ ========================================== ================== 66 28 99.1 36 GTTACGAATCCCTATAAGGGGTTATGAG # Left flank : GTGAAGCACTTGGACTCGAACGACAGGTCCTCGAGGTTTCCGAGTATGAATCATTCAAGCGGCGGGCTTAATCATGTTCATGCTCGTCACGTATGACGTCGAAGCGAAACGGACCAGAATTTTCAGAAAAATCCTGAAGCGCTATCTCAACCACGAACAATATTCTGTTTTCTCTGGAAACATGACCGAAGCGGAAGCCTTGCGCTTGCGCCAAGAGCTGAGCGCGGCCATGCTCCCAGAGGATAGAATCACCGAAATCACAGCAGAAAACCGCAAGAATGTAGAGGTCACCCACTTGATCAAGGCAAAATCCGGCAAAGGAGCAGTCAGTCGTAAAGCGGACACCAGACACAAGACCGATTACGGCGTCTTGTAGCCCCAGACGTCTATCGCCTGTGAAGTCTCCAACTACAGACTCCGACGCACGGCCATCAGCCTCCACACAAAGAAAGTCAACACAAGCATCATTCAACACTAGAGGAAACACATCAAAATCGAGG # Right flank : CAGCCTCTAAGCAGATCTTGGGGATGTCTGGCATGGACGACACCCCCTATGAGAGCCGACAGACCTCACCCAGCGGCGTGGCGCTGGAGACGCACCAGATCAACATCTGGTGTTAGGATGGGGTATGGAGCACCATCCCAGGCGGTGCCCGCTCGCGTGTTGACACGGCCCGGATCGGGGCCGCACGCAATGCTGCAACATGGATGTTCAATCAGTGCCCCACGCCGCTCACCGTCTGCCGGACGGCTCGCGATGACGCTCGACGAGTCGGTCTATATCCGTCGTCTCACCACCCTCGGTGACACACAGCCGATCGCCGCCAGCGCCGATATCCGCGCGGCCAATGGCAGCAAGTTGCTGGCCCGTGGCGCGCGGATCAATCGCTCGGTGCTGGAGCGATTGCTGCGCCACAAGCTGCTCGAACCGATCGACCGAACCACTCGCCTCGCCGAGCGGGTCGATCGCACCACCTTGCTCGAGACCATCGCGCGCCTGCTCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGAATCCCTATAAGGGGTTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 1601141-1599277 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007031.1 Marichromatium purpuratum 984 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1601140 29 100.0 33 ............................. CAGAATTGCAGCGCCGCGTTTGGCGACGAGAAG 1601078 29 100.0 32 ............................. AGACTGCAATGAGCCCCCTCGTTGCGTTCTGT 1601017 29 100.0 33 ............................. TCTGCAATCCCCGCCCGCTTGAGCGCTTTGTAC 1600955 29 100.0 32 ............................. ACTACTACATGGACAAGGGCGTGATCGAGCGC 1600894 29 100.0 32 ............................. GTCACCGACTCAACCATCACTATCGACAACGA 1600833 29 100.0 32 ............................. GGTGGCATCCCGCTTGGCTCCGCCTGCGCTGC 1600772 29 100.0 32 ............................. CAACAGGATAGCCATGAGTCATTACCCCACGA 1600711 29 100.0 32 ............................. TAGTCGCGCCCAAAATACGAGCGACGCACGAG 1600650 29 100.0 32 ............................. CTCGCGGTCACGCTCATCAGCCGCCGAGGCCT 1600589 29 100.0 32 ............................. ATCACCGTCGACGCGTTCCGCACGGCGCTGAA 1600528 29 100.0 32 ............................. GCGTGGCTGGTGGCGATCGGGGTGGACGAGGA 1600467 29 100.0 32 ............................. GGAAGGGGCCGAGGAGACGGCGCTATCGGCTC 1600406 29 100.0 32 ............................. GCTCGCGGCTGGCCGGCGGAGCATCTATCTGC 1600345 29 100.0 32 ............................. TTTTCGATCACTTGGTCCGCTTCTTTGTAGTC 1600284 29 100.0 32 ............................. ACCCCATAAACGGGATCGAATCGAACGGGCAC 1600223 29 100.0 32 ............................. CCGAACCATAACAGAACGCAACGAGGGGGCTC 1600162 29 100.0 33 ............................. GCGTTAGCGTAGTAGATGACGAACCGCGCGCGG 1600100 29 100.0 32 ............................. CTCTACAGCACCCGCTATTGTTCCCTGACCAC 1600039 29 100.0 32 ............................. ACACGGCCCGCAGCACCTTGCTCGGCGGCATC 1599978 29 100.0 32 ............................. GCCGACAAGCGCGCCCGGGAGAAGATCGAGAA 1599917 29 100.0 32 ............................. ATAGCGCCTTCCAAGACGCGTTCGAGTGCTTC 1599856 29 100.0 32 ............................. CAATTAAGGGAGATAGCAGGCGTGTTGAAGGT 1599795 29 100.0 32 ............................. AGTCCTGAGCCTGGCTTGGTCGAGATCTCCCT 1599734 29 100.0 32 ............................. AAGGGCGCTCTCATCGTCTCCGGCCTCGGGAC 1599673 29 100.0 32 ............................. GAGGCTGGCCGAGGGAAACGGGATCACTCAGA 1599612 29 100.0 33 ............................. GCTTACCGGGTCGGCGTCGTTCATCAGGTCACG 1599550 29 100.0 32 ............................. TGCGGCGACGGTGACGACGCGGGCGTTGGCGG 1599489 29 100.0 32 ............................. CCGATAAGTCAGAGCGCTATGGTGGCGTGATC 1599428 29 100.0 33 ............................. CTGATCTCGGCCTGGGAGATGCGGCAACCGTTG 1599366 29 100.0 32 ............................. GTTCTCGATGGGCAGTACGCCGGACGGGGCCT 1599305 29 79.3 0 ...........A..C.........TCT.C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : AAGCTGATCCCGATGATCGAGGACGTCCTGGCCGCCGGCGAACTCGCGCCACCACCACCGGCACCGGAAAACATCCCTCCCGCCATCCCCACCCCGGAAGGACTCGGCGATGCTGGTCATCGTCACTGAGAACGTCCCACCCCGGCTACGCGGCCGGCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGCGTCTATATCGGCACCCCCTCCAAGCGGCTGCGCGAGTTCATCTGGGAGCAACTCCTCGCCGGCGTCGAGGACGGCAACGCGGTCATGGCCTGGAGCACCAACACCGAGTCCGGCTACGACTTCCGCACCATCGGCGAGAACCGGCGCATCCCCGTCGATTTCGACGGACTCAGACTCGTCAGCTTCCTCCCCCCACCCCCATCGGACCCCTCACGATGATCGAAAAACCACCCCCTTCGATAGAACCCGCAAATCTGGTAGATTCAGAGGCGCGTATTTTTCTTCGCTGAATCATGCAAATACGCGAAGA # Right flank : AGCTCACCGCACCACCCGCCAACGCCGCCACCACTGGTCGCCCCACTCGAACAGGGCGAGGCCGGCGAGGATGGTGAGGCTGCCGAGCCAGATCCTCGGGGTCAGCAGTTCGTCGTTGACGAGGTGGCCGAGGAGCAGGGCGAGCACCGGGGTGATGAGCGGGATCAGCGCCACCCGGCTCGCCTGCATGTGGTGGAGCACGAAGTAGTAGAGGATGAAGCCCAGGGTCGAGCCGAACACCGCCAGGTAGAGGATCGACCAGAGCGCGCGCGGCGGTAGCGTCGCCGGCAGCGCGAAGCCCTCGCTCAGCCCCCAGCTCAGCAGGAACAGCGGCACCGCGATCAGCAGCGCGCCGGTGGTGGTCTCGACCGGGTGCAGGCGCGCGCCGATGCGCTTGATCCAGACCGCGCTGGCCGAGTGGATCACCACCGTCACCAGCACCCCGGCCATGCCCAGCAGCGCCTGAGCGCCGAGCGCCAGCCCCTGGGCGAAGATCAGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2547676-2548269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007031.1 Marichromatium purpuratum 984 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 2547676 34 88.6 33 ..-A................A.............G CTCCACACACCGTGCCTAACGGCAATCCGGCAT 2547743 35 94.3 35 ...A..............T................ GCGTCCAGGGTGTTGATGGTTTCGACGCGAGCAGC 2547813 35 100.0 35 ................................... GTGGCGGATGCCGCCGTCGGCGAGTTCGAGCGCCT 2547883 35 100.0 37 ................................... GTTCGATGTCACTGAAATACTTCAAGTTTTGCTCCCT 2547955 35 100.0 35 ................................... GCGAGCACGCTGGTTCGGTTGATAGCGGTGCTCAG 2548025 35 100.0 35 ................................... CCGAACGCGAGGATGAGCAGGAGGGCGCTAGGGAT 2548095 35 100.0 34 ................................... GCGAGGCCGCGCCCACGGCCACCCCCAACGTGGT 2548164 35 100.0 36 ................................... CAGCGAGGCCGCGCCCACAGCGACCCCGAGCGTGGT 2548235 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 9 35 98.1 35 CCTTCAACGAAGCCCTCCCGCGGGAGGGATGAGTC # Left flank : GTTGGTCAGACGCAGCAGCTTGACCGCCGCTGCCGGTGCCGGCGGCAACTCGCTGACATCACCGCGCAGGGCCGTGCGCACCGCCCGCGCGGTCCACTCGGGATCATCCATGCAGCGCCGGCCCCGTATCGCAAAATCGGCTGGAGACATCGAATCATCTCTATCCTTGGCGCGCCCACCGCCTGCCGGAGGCCTGATGGACACTATTCCTGCTCAACCACAGCATAATCACGCACTGGACTCCATCCCTGAAAGACCAGCATCGCATGACTGGCAACGAAAGCGGCACAGTATACCGGGCGTTGACGCCCGAGGAACTCCGGCGAGCGGCAACAGCATCGGAAGCCCCGCCGAGCGGCAACGTTCCGACGCACCTTATCGTGGTCTAGCCGAGATGCGAATGACTGACAAGCTTATCCGACGTACCCCGAGACCAGCCCGCGACGCGCGAGCACCGTCGGCGAACCGCCGATCGGACAACCATGCCATCCATCCGCCAA # Right flank : CTGCGTGTCTTCAAGTCGCCACGCAGCCAGGAAAAAACTCCCGATTTTCGCGAACTCCTGGGTAAATCGACGCAAACGCTCGTTCGAGATCGAATCAAATCGCACAAGTCTTTGTTTCGTAAAACAACCTGATCTGCGTGAACCTCCCAGGGTTTTGCCGGTCACTTCAGGTTCGCGCAACAGCGGGGCGCGCCCAGCCGAGCACCTTGCCGAACTTGCCGCCACTGAGCAAGGCCGCTGACCAGTAGGTGACCCCCAGCGCCTCGCGCTCCCGATGCGCCAACCGCTCACCGCCCAGGATCAGCGCGCGCAACATCTCGCACCCGACCCACTCGGCACAGACCGGATAGCGCCACTCCCGGGGTGACATGCCGACGGTGCGCCCGTTGACCATCGGCCACAGCGGCAACGATTCCCAGGCCAGCCAATAGGCCCCGGCGACGCCGAACTTGGGGGTGCTGGAGACATCGCGAGGCGAGGCTGCGGGGTCGATCCGCGCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGAAGCCCTCCCGCGGGAGGGATGAGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 4 2920092-2917845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007031.1 Marichromatium purpuratum 984 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2920091 32 100.0 36 ................................ GTGTCACACTCCAGCACCAGCGTCAGCATCTGGCGA 2920023 32 100.0 36 ................................ TGCCGGCGCAATGACGATTCCGCCGCATGTGCCGGC 2919955 32 100.0 35 ................................ CCAGTAATCCCATACTGCAATTGCTTTTTTCGCCC 2919888 32 100.0 35 ................................ GCTGAACTCGGCGGCTGGACGATGGCCGGGCTCGC 2919821 32 100.0 35 ................................ CGCGTCGGCATCATCGGCGGTACAGACGGCACCGA 2919754 32 100.0 35 ................................ ATCCTCTACATGTCCGACGCCGCCCAGTCCCAGGC 2919687 32 100.0 36 ................................ AGCGCGTCCCCTGAGGACGACTACAGCCATGTATCC 2919619 32 100.0 36 ................................ GGCGATACGGTCGTACTCGGGCTCGTCCTTGATCAG 2919551 32 100.0 36 ................................ TTCCGCGCGGCTGACCTGGCGCTGCTCGCGCGCCTC 2919483 32 100.0 35 ................................ GACCCGGCGCGGCACACCATCGCTGAACAACAGCG 2919416 32 100.0 36 ................................ TTTACGTTCAACGCGGAATTCCGCGGGCGATCCAGT 2919348 32 100.0 36 ................................ CCGGACAAGAGGTCGGAGAAGCCGCCGTCCTTGCGG 2919280 32 100.0 35 ................................ GCGCAGGAGTCCGACGCAACCGATGCCGTCGGCAA 2919213 32 100.0 35 ................................ TCAAGAGAACAATATGAAATACCCGGCAACAATTA 2919146 32 100.0 34 ................................ AGCGCGACGTGCCGGTCGCGCCGCTCCCCGAGGT 2919080 32 100.0 37 ................................ TAGGCAACGCCATTGGCGGTCCTCCTCGGGCTCGGGG 2919011 32 100.0 35 ................................ GTCGCCTTGACCAGCGGGATCGTTCGCGAAATCTC 2918944 32 100.0 33 ................................ GAACAGTCGCGAGCAGATCCGCAACGCCATCGC 2918879 32 100.0 36 ................................ CCTCAGATAGGCGACGCGGCGCTCGAGGTCGCCGAG 2918811 32 100.0 35 ................................ TTGATCAGGTGGGTTAGCAGCCCGGCGAGCAGCAT 2918744 32 100.0 36 ................................ TTCCAGATCGGCGAGGCGCTGCTTGTATTCGAGCGC 2918676 32 93.8 33 .......C.....A.................. GGAAGCCCTCGACGATCTCGCCATGCACGAACC 2918611 32 96.9 34 .......C........................ AGCTCCTTGCGGGCCTTCTGGCCGCGCTTGCGCA 2918545 32 96.9 36 .......C........................ TTCACCGGGCGGGAAAAGGAACTCGACTGGAAGGAA 2918477 32 93.8 35 .......C.........T.............. TCCAGCACCATCGGGCCAGCCGGGGTATTGACCAC 2918410 32 96.9 36 .......C........................ ACGATCCGGCGCCAATGGCCGGAGACGACATGGGTC 2918342 32 96.9 33 .......C........................ CGCACACCCCAGCGAATGCGCCCCGCGCGGGGT 2918277 32 96.9 34 .......C........................ CTTGGCCTTCGGGCTCCCGCTTGCTCCGATGGTC 2918211 32 96.9 35 .......C........................ CGCGCTTGGGATTAAGCGCCGGCACAGTGCGCCCG 2918144 32 96.9 35 .......C........................ TCCATCGACAATGACGACTGGGAGAGCGAGGGCTT 2918077 32 96.9 35 .......C........................ ATCCACCTCGCCCTGTTCGCCGCGATGCCGATCCT 2918010 32 93.8 34 .......C.......................A ACTGGCATGGCCGACAGTATCGATTCATCCCCTT 2917944 32 87.5 36 .......C......A........A.......A AACCGACAGCAACTCCTTACATGAACCCCGTTGCTG 2917876 31 78.1 0 ..T...-.....T..A....A...G.....G. | T [2917867] ========== ====== ====== ====== ================================ ===================================== ================== 34 32 97.7 35 GTCGCGCTCTATACGGGCGCGTGGATTGAAAC # Left flank : CCCTGTCTGTGGAGGTGAATCCACCATGATGGTGTTGGTCAGCTACGACGTCAGTACACGCGAACCGGAAGGGCCGAAGCGGCTGCGGCAGGTGGCCAAGGCGTGCCTCGACTATGGGCAGCGTGTTCAGTTCTCGGTCTTTGAGATCGAGGTCGAGCCGGGACAGTGGGCGCTGCTCAAACAACGACTGTTGGACCTGATCGACCCGCAGCAGGACAGCCTGCGCTTCTACTATCTCGGCAAGAATTGGCAGCGCCGTGTCGAACACATCGGCGCGAAGGAGACGCTCGACCTTCATGGCCCCTTGATCCTCTAGCGGGAAAAACGCGAACCACAAGTGACCGGCGAAACCCCGGGAGGTTCGCGATTTTTTATATTTTTGATTTTAAAAAATATTTACTTTCTGGCTCGATGGCCGAGTTCCACTCGGCGGAGAGCCGCCCCCGGTTCGCAAAACAGGCCGAAGTGCCTCTGGTCTTTCAGTCGGTTAGGATGACAGA # Right flank : GTGGCCTGTGCCGGGATCGGCTTGGCCTTGAGGGCGCTGCGTCCTGTGTGCTCAGAGATCGCCTACCTCAATGTGTTGTGGTGGCAAGTTTTGCTTGCTTGGGTAACGCCGAAGCCTTGCGGATTAAGTTGGAAGCCAGAGGTCAGACTGTGTGCCTTGCAGGTGATGCCTGGGGGGCAAGGGTGGCTGGCTGGCGGTTAGTTCAGGGGGTAGGTGCGCCGGGTTGACCAGTCGTCTCCGTCTGCGCCGTTTCGTCTGGATTGCGCTGGCGTGGGCGGAGTACCATCGGTCGCGCCCTTGCCGGAGCGGCGCGCGCGAGCGTGTCGGGACTGGGACTGCTCCGGGGTCTCTCCGCCGCGATCGCGGCGGTTGCGCGTGACTCGCGGAGACCGGCTGCGGCTGGCGGGAGTGCCGCGATCCATCTTGAAGCCACCACCCCGACAAGCAGAGACCACATGCCTACGATCGGAACCCCTTTCTCTCCCAACGCGACCAAGGTC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTATACGGGCGCGTGGATTGAAAC # Alternate repeat : GTCGCGCCCTATACGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //