Array 1 39523-39372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDM01000049.1 Escherichia coli strain CVM N33601PS N33601PS_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39522 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39461 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39400 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCCAAAGAAGAACAACGAGCCAACTGGTTTCA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-1418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDM01000067.1 Escherichia coli strain CVM N33601PS N33601PS_contig_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 108 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 169 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 230 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 291 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 352 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 414 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 475 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 536 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 597 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 658 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 719 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 780 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 841 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 902 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 963 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1024 29 96.6 32 .T........................... ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1085 29 96.6 32 .T........................... GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1146 29 96.6 32 .T........................... CGATGATGTAATAATTAGAGCAGAATCCAGTT 1207 29 96.6 32 .T........................... CGATGATGTAATAATTAGAGCAGAATCCAGTT 1268 29 96.6 32 .T........................... CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1329 29 96.6 32 .T........................... GGTACACGGATATTCTGTCTAAAAGTTAACTA 1390 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCCAAAGCAAAAGAAGCTGTCGATAATATGCGCG # Right flank : GCGTCTCGAGCGCGGGACGATTCAAAACCAGCGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48-1113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDM01000068.1 Escherichia coli strain CVM N33601PS N33601PS_contig_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 109 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 170 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 231 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 292 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 353 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 414 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 475 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 536 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 597 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 658 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 719 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 780 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 841 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 902 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 963 29 96.6 32 ............T................ GCCCAGAATCTCTTTTAGCGCAACGATATTCC 1024 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 1085 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGGCCAGGCGGGAAGCGATGGGCGGTTAACTGGTG # Right flank : TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAGGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDM01000069.1 Escherichia coli strain CVM N33601PS N33601PS_contig_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 110 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 171 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 232 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 293 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 354 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 415 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 476 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGCCGGTTCGCGAGGGGATCAATCTTCGCGCAGAG # Right flank : TTCTGTCAGCGCAGGCATACGGCCCGCCTGTGGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDM01000077.1 Escherichia coli strain CVM N33601PS N33601PS_contig_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 109 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 171 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 232 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGGCCAGCGTCCTGAAAACACCCTCAGCGTGCATG # Right flank : CTCTTCAATCGCTTAAGGATCAGAGAATAGTTGAGTTCCCCGCGCCAGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //