Array 1 1-730 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CATU01000002.1 Salmonella enterica subsp. enterica serovar Agona str. 49.E.09, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                               	Insertion/Deletion
==========	======	======	======	=============================	==============================================================	==================
         1	    28	  96.6	    32	-............................	TTTTATAACGACACTAAAACCCGCCAGTTATA                              	
        61	    29	 100.0	    32	.............................	ATTTTAACGGCAAGGTCGACAGGAGATACCAC                              	
       122	    29	 100.0	    32	.............................	GATCATCACCCAGGCATTTTCTGGAATATGAA                              	
       183	    29	 100.0	    32	.............................	AATCCCGATGATCATGAATATTTCTGGCGCCA                              	
       244	    29	 100.0	    32	.............................	AAAAATAGTCCTGAACGATAGCCCGCGCGGTC                              	
       305	    29	 100.0	    32	.............................	AAAAATAGTCCTGAACGATAGCCCGCGCGGTC                              	
       366	    29	 100.0	    62	.............................	AAAAATAGTCCTGAACGATAGCCCGCGCGGTCTAAAACGGCGCTTGAGAACAGTATCAATAT	
       457	    29	 100.0	    32	.............................	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA                              	
       518	    29	  96.6	    32	.....T.......................	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC                              	
       579	    29	 100.0	    32	.............................	GCAGAAACAGAAACCGGATATGAGCCATCCAT                              	
       640	    29	 100.0	    32	.............................	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA                              	
       701	    29	  93.1	     0	A...........T................	|                                                             	A [727]
==========	======	======	======	=============================	==============================================================	==================
        12	    29	  98.9	    35	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                                              	       

# Left flank :   |
# Right flank :  GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.07
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//