Array 1 962828-964931 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067990.1 Salmonella enterica subsp. enterica serovar Weltevreden strain colony_64 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 962828 29 100.0 32 ............................. GTCNNNNNNNNNNNNNNNNNNNNNNNNNNNAT 962889 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 962950 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 963011 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 963072 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 963133 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 963194 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 963255 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 963316 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 963377 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 963438 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 963499 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 963560 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 963621 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 963682 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 963743 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 963804 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 963865 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 963926 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 963987 29 100.0 93 ............................. CCGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC 964109 29 100.0 33 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC 964171 29 100.0 32 ............................. GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT 964232 29 96.6 32 ............................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGA 964293 29 93.1 32 ...........................NN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC 964354 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 964415 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 964477 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCACTGGGAT 964538 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 964599 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 964660 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 964721 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 964782 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 964843 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 964904 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 34 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 981439-984213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067990.1 Salmonella enterica subsp. enterica serovar Weltevreden strain colony_64 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 981439 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 981500 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 981561 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 981622 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 981683 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 981744 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 981805 29 100.0 32 ............................. GTANNNNNNNNNNNNNNNNNNNNNNNNNGAAC 981866 29 100.0 32 ............................. GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 981927 29 100.0 32 ............................. GAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNN 981988 29 100.0 32 ............................. TGGNNNNNNNNNNNNNNNNNNNNNNNNNNACG 982049 29 100.0 32 ............................. GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC 982110 29 100.0 32 ............................. GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG 982171 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 982232 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 982293 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 982354 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 982415 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 982476 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 982537 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 982598 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 982659 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 982720 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 982781 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 982842 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 982903 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 982964 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 983025 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 983086 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 983147 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 983208 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 983269 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 983330 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 983391 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 983452 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 983513 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 983574 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 983635 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 983696 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 983757 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 983818 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 983879 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 983940 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 984001 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 984062 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 984123 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 984184 29 93.1 0 A...........T................ | A [984210] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //