Array 1 298-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000111.1 Pseudoalteromonas rubra strain S2471 contig0112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 297 32 100.0 34 ................................ GCGTGGTAGTTATATATACGGTAGTTGCCGTAAA 231 32 100.0 36 ................................ CGACTGACCCGAAACTTTTTTATGCAATCAGAATGT 163 32 100.0 34 ................................ CATCACCTTATTGCCTTGGGTTACGTAGCGGTAC 97 32 100.0 33 ................................ AACACCGTAACTTTCGATGCGATCCTGCATTAC 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 34 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000109.1 Pseudoalteromonas rubra strain S2471 contig0110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 32 100.0 34 ................................ TTCCAATCACTGGCTGCTTGGCTGAAACAGCTAC 67 32 100.0 33 ................................ ACCCACTCCCAGCGCCTGCCCTGAAAGAATGGG 132 32 100.0 34 ................................ CTATGGGGGTTAGACCGTACAGCGTGCGAGAGTG 198 32 100.0 33 ................................ GTTGTCGCTCCCCAGCTCTGTCAGGCCCAGGAT 263 32 100.0 35 ................................ CACCGCTTGTCCATGTATAGCCGGTAACTTAAAAG 330 32 100.0 33 ................................ TTCAGGTGTGACCGGTTCAACATTCCAGTTTCT 395 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 34 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : AGGCAAAGATGCTGTGCTTGCTCTTTCACCCGAGTCGCGTCCTTCACGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1478-655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000120.1 Pseudoalteromonas rubra strain S2471 contig0121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1477 32 100.0 33 ................................ GCACGCTATCCATATTTTCTTTGAATTTTTCAA 1412 32 100.0 34 ................................ TTCTGAGCTTATTTGAGGGGTATTTCCATCCAAA 1346 32 100.0 36 ................................ TGCAAAACCACATGCGCCAGCTTAATGCCCAGGCGC 1278 32 100.0 33 ................................ CTCGATTTTTGTGTGGATAATGTCAAAACAGGC 1213 32 100.0 34 ................................ AGGGTAGGTTTTATACGTCCCACTATGCTGCGTT 1147 32 100.0 34 ................................ CATAAATTTATATTAATTTATAAACTTTATGATT 1081 32 100.0 34 ................................ AGCCATCTTCTTCGTCCTCAAACAGGTATCCGAG 1015 32 96.9 33 .........T...................... ATTCATGGGTTTGTCTCCGGGGGTTTTGGTTTT 950 32 100.0 34 ................................ GCACGTTGATAAAGAGACCACAACACATCGAAGC 884 32 96.9 33 ...............C................ CAGTGCATGACTCGCATACAAAATGTGCTGTTT 819 32 100.0 36 ................................ GTACCTAGAAAGGGGTTGCGCAAAAAAACGCGAGAA 751 32 100.0 33 ................................ AAGACAATTGTACAACATTTTTATTTGGTCATC 686 32 84.4 0 ...................G.....AC.G.C. | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.3 34 GCTGAGCTACCCGCGTATGAGCGGATTGAGAC # Left flank : CGTATGAGCGGATTGAGACAGTCCATGTGAGGCGTTGCTTAACATACGGACAC # Right flank : TACTAAACAGATCGAACTGTTGCTCTGCAATGGGGTTTTGGCTGTGTGGAAATAAACTCTGGCCTTTGGGTTCACGCTCGGCATTTTTTCGTAAATTGGCTTAAAGGCTGCTTCCACTCAATATCCTACATTAAAGCGTGTTTTTGCATGCTAAGTTGCTCTGAACGTAATTTATATTTACTAAATCAACGCGTTACGATCTACTGTCAAAACCAAAATTACATTTTGTCAGTAGCTTAGATAGCATACCATTGAATTTTATGCCTTTTACTGGTTTATGAAGGGTTAGAATGTCAGTAAGTCAGCGGCTTTGGGAACAGCCGACAGGACATCGACATTTTTACCCCCTACAGCCCTTGTACGACGCGGCCTCGATCCGCTATAGTACTGGAGACCCCCGACTTTAGAGGCTGAGAGCCGCCCGGAAAAAGTACCGCTTTTTCAGGCTCGATGAGTGAAAATCATGCGTTTTAAAAGCACCGCTTTTTGCATGATTTGAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAGCTACCCGCGTATGAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 32843-32562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000012.1 Pseudoalteromonas rubra strain S2471 contig0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 32842 21 91.3 42 --..................... CGGTTTCAGTGCCATGCTCGGTGTTGAGCGCAGCTGCATTCC 32779 23 100.0 42 ....................... GATAATTTTTGATTTATCTGGTCTGAGGTTGCGCTGCATTCT 32714 23 100.0 43 ....................... GCTGGTATGTCATTGACTGGTACAACTAAGGTGTCGCTGCGTT 32648 22 95.7 42 ..........-............ TTGTTTGCATAATCCCCTTCGAACATGTCGGCGCTGCGTTCC 32584 23 78.3 0 ....ATT..........A....T | ========== ====== ====== ====== ======================= =========================================== ================== 5 23 93.1 42 CCGCGCGAGAGGGGATTGAGACA # Left flank : | # Right flank : TAATCAATGCCAACTCAAACTCTTGAGATTGCACGTTTGGCAACGCTCAGGTACATAACAGAATGCTCAGGCCCATCCGTCCATTTGGTCGTTAGCCAAGTCGATACCGGATCAAGTCCGGTATAACAAAGGTGTGATGATCGAGTGCTACCAAACTCAGCCATATTCCGCTAGCCCAAAATACTGGGCAAACGCAGCGGTTGAGCATAGGTACAGACAGCCAGTTTATAACTTGGGCCTGAATTGCTCGATGATTTGCGCATCCACCCAATAGGGGCCGCCAATAAAATAGCGGCTGCCGTCTTCTCTTGTTTTAGTCTCACCACGCCAGAAGAACAGGTATTTACCATCCGGCGTTACTTTGGGGCGTTGCTCGTAAAGTGGCGTATTTATCTTGTCGCCCATATTGATGGCTTCTCCCCAGTTGCCGTCTGGCTGTCGGAAGCTGATGTAAATATCAGGTGTGTTTTCGCCGTCCTTTTCAGCATCCCACATAAGAT # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCGCGAGAGGGGATTGAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 610-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000124.1 Pseudoalteromonas rubra strain S2471 contig0125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 609 32 100.0 33 ................................ TTCAATACTGCGATTTGCACCCACGACATAGCC 544 32 100.0 33 ................................ TCTTTTTCTGAAATGGTACTTAGACCACACAGA 479 32 100.0 34 ................................ AGCTGCTCAATGAGCGCATGCAGCATGGTCGGCT 413 32 100.0 34 ................................ AGTAATGGTGTCACTACCCGCCAGAATGAGTTTA 347 32 100.0 34 ................................ ACGATTAATGCGCTCATGTGGTTGGTTTTAAAAA 281 32 100.0 33 ................................ AATTCATGATTGACAATCCGGGCCATATACCAG 216 32 100.0 34 ................................ AGATCGAAGGCGTCGAGCCAACGGAAATTAAGAA 150 32 100.0 33 ................................ GCCGCAGGCGATCAACCAGCCACCGACATACCC 85 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 9 32 100.0 34 GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Left flank : ACGGACGCGTGGATTGAAACCGTCATCTAGAATGGGGTGAGAGTCAACGGTAT # Right flank : CCAGTTGACCAATATCGATCCAGCTGAAATCCGTAGTCGCGTCCTTCACGGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 164-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000125.1 Pseudoalteromonas rubra strain S2471 contig0126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 163 32 100.0 34 ................................ GCTCTTTGCCCAGCTCAGCTAGGCGCTTGTCGAT 97 32 100.0 33 ................................ CTCCATATGGAAGACCGTGTCGGCAAACGGTTT 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Left flank : GGACGCGTGGATTGAAACTCCCTCTGCCATCCATACGCGCGGTGGAGTCGA # Right flank : C # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000126.1 Pseudoalteromonas rubra strain S2471 contig0127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 32 100.0 33 ................................ GCTGACGCTTCCGGCTCTGCCGGTGTCGCTCCT 66 32 100.0 35 ................................ TCTATACCCAACTGCTTCAAAAGCTGGTCTATGAT 133 32 100.0 33 ................................ AACACAAAGCTTGTGTCACCTTGTATAAGTTCC 198 32 100.0 34 ................................ ATCAAGGGAGCATTAAAGAGCCGTCGGTTGTTAA 264 32 100.0 34 ................................ TACCCGCGTATTAAACACTGAGGCATATATTGAC 330 32 100.0 34 ................................ ATGAAAAGCTAGCTCTCTATGTGCATTGTTCTCT 396 32 100.0 33 ................................ CCGTTGAGAAGGAGTGAATAAAGTACGCGAAAC 461 32 100.0 34 ................................ CCAATATCCCAAATTTGAATGAACACGCAGAGCG 527 32 100.0 34 ................................ AGAGGTTGCGGATCACAATGGCGACCTTTATTTC 593 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Left flank : | # Right flank : TTGATGATTTAGGGGATTTTTTCTTTGGGTGGAGTCGCGTCCTTCACGGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000154.1 Pseudoalteromonas rubra strain S2471 contig0155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1 32 100.0 33 ................................ TGCGTATGACTTTAATCCGGAGCTGAAAGTGTC 66 32 100.0 34 ................................ AGTCTTTTGAGCAGTCACATTTGGACCGCTCAAA 132 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : AATTACATCAGCCCATGCGAATCGACGCCCCAAAGTCGCGTCCTTCACGGG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000156.1 Pseudoalteromonas rubra strain S2471 contig0158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 55 32 100.0 34 ................................ GATTTTGATATTCGATATAAATATTCATTAGACT 121 32 100.0 35 ................................ AACCATGAAGAACCTATGCACCCCCGCTGATAGCC 188 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : GGGCGCGTGGATTGAAACGCGCAACCGCATCACGGATAAACGCCAGTTGCCCACG # Right flank : | # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 296-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000161.1 Pseudoalteromonas rubra strain S2471 contig0163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 295 32 100.0 33 ................................ AACCTCCATGGGTTTGAACTCGTACATGCCATC 230 32 100.0 35 ................................ GACAACTGCAAATTTTTATTACATGGTCCTATGAC 163 32 100.0 34 ................................ TGATCTGTGGTCCATCTAACCGTGCCAAAGCCAA 97 32 100.0 33 ................................ AGTCTTTACAACAGAGGTAAAGCATGTGGCGTA 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 34 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 478-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000164.1 Pseudoalteromonas rubra strain S2471 contig0166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 477 32 100.0 34 ................................ AACTTGCTTTTCCAGTACCACGCTGCGCTCCAAT 411 32 100.0 34 ................................ CGCGTCATTTTGGGAGTCCAGTTATCCAGATGGA 345 32 100.0 33 ................................ TACTTTATTAGCCCATGCTTTTTAAGCTCATGC 280 32 100.0 33 ................................ TAATGATCCGAAAGGGTTTGAAAGTTGGGTTGT 215 32 100.0 33 ................................ ATCAAACCAACAAGCCTTAACGCTTTTAAAGTT 150 32 100.0 34 ................................ CAAATCACCGCCCGCTAATTTGAACCAATCACCT 84 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 7 32 100.0 34 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CAGGTCTGTTTGGGGGTAATACGTCCAGTGTTAATGTCGCGTCCTTCACGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13093-13580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000003.1 Pseudoalteromonas rubra strain S2471 contig0003, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 13093 32 100.0 33 ................................ CACGCGGTATGGAAATTGATTTTAAAGAGGCGG 13158 32 100.0 34 ................................ TCATCGTCCACCGTGATGACACCTGCGTCAATCA 13224 32 100.0 33 ................................ GCGCGCGTGGGGTTATGAAATCCAAGTTCGAAC 13289 32 96.9 33 ..............A................. TCCGGCTTTACGTGAAGCGCTTCGTATGGCCAA 13354 32 100.0 33 ................................ CCCCCTCCGGGCGCTCTCATCAGCGTTTTCTCT 13419 32 100.0 33 ................................ AACAAAAGAAAAGCGGCCTAAGCAGCTTCCGAG 13484 32 100.0 33 ................................ CGCGTAAAAGTCTTTGTAAAACGTCTCGCCATC 13549 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 8 32 99.6 33 GCTGAGCTACCCGCGTATGAGCGGATTGAGAC # Left flank : TGGTTTGTTGCGAATGACCGTAGTCGTAGTGAAGAAGGACCACAATTTTTACGAACGGATAGTGACAATCGTTCTGAACCGCTAGTGGAACTAGAAAAGCTAAAAGGTAAAGGGGGCAACAATAACAAGGCCCGGCATAATAATAACCAGACCGGGCACAACAAGCCAAGGAATAAGCGTAAACCCCATTGGAAGGATAATCGCAGATAACCAGGCTTGTGTATGGCCGCAATAAGACAGGGGTCATTCCCTTGTCCGGGCGGCATTGCGGGCCGACGGCTTGGTAATAAAACAGCATTTGTTTGCCTGTGCAACAATGCCGCCAGCGCTAACCTCTGGTACTCAGCAAAACCCCGGTAGGTTAGCGCTTTTGTAAGTTGATGTTTATTAAAAAGTTGTGTACCTTAGCACCGGCGCAATGGTCAGCATTGAGCAAATATCTCAGAGGTTAGCGCAAATCCCAGCTCAGCCCTTATGGCCAGTGGGATACAAAGTCGGTA # Right flank : GGCACTGTAATAATCCAATCTGCCACAATGTCAAGCTGAGCTACCCGCGTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAGCTACCCGCGTATGAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 478-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000046.1 Pseudoalteromonas rubra strain S2471 contig0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 477 32 100.0 33 ................................ CCCAAATAAGCAGCCGTCACCAGTGACGGCTAA 412 32 100.0 33 ................................ CGCATTGAGCTAAACGGCAAAATGCTGTCCGAG 347 32 100.0 33 ................................ TCTGACATGGCGCAGGTCGTCAATGAGCAATTA 282 32 100.0 33 ................................ TTATGATCGGTAAGATAACTAACCGTGTCATTG 217 32 100.0 34 ................................ AAACCCGCCATGCTCAAGGTCTAAACCAGTTTGA 151 32 100.0 34 ................................ AGAAAAGGAGTGAACAATGATTAAGGTCTTTTTA 85 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 7 32 100.0 34 GCTGCATTCCCCGCGCGAGAGGGGATTGAGAC # Left flank : CAACGCTCTTTAACAATTTGGAAATTGGATTGTCACCCGGCCCAGACCCAGAATTGCACAAGTAGGTCGGGCCGGGTGATCCTTAGTTGTTTGAGACTACTGGAGATAAAGACGAAACAACTAGCTCCCAATCTTGCTGTTGTTCACAAGTTTGGACGCTCCCCGTTTGATAGGGGATTATGACTGTTAGAAGAAACGCTCCAATTCCTTTTGGAGATGTTTGAATACTCCCCGTTTGACTATTTAGCTTTTTACACAGTGCTTGCCAACCACTCTCCGTCATTCCGCACTTGATGCGGAATCTACCTTCAGACAACTCCGTTTGCGCTAACCTGTGGTTCTCATGAAAACCCCGGGAGGTTAGCGCTCCTGTATGCTTATGTTTATTATCATATTGTGTAATTTTGATATGCAGTATGGATCTGCCTAGGTCAAAATTGACCGAGGTTAGCGCAAAAGCCTGTTTATGGGCTCGTATTACAAGTGCTTTAGAGCAGGCC # Right flank : CATGTCTTCGTCGTCCGCTCCATAGTGTAAAGCGGCTGCATTCCCCGCGCGAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCATTCCCCGCGCGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1-230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000089.1 Pseudoalteromonas rubra strain S2471 contig0090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1 32 100.0 34 ................................ CAGTGAATCCGAACGAACATGACCGGCATCAATG 67 32 100.0 34 ................................ CTTTACTGTTTGGTGATGAGCTGGGTGCTGTCGC 133 32 100.0 34 ................................ ATCGCTTCGCCTGGATGCTCAACACGCATTTTGT 199 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 37 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000090.1 Pseudoalteromonas rubra strain S2471 contig0091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1 32 100.0 33 ................................ ATCGAAAGAGTACCGGGTGGTGTTTGATGGTCT 66 32 100.0 33 ................................ TGAAGCTTTAAACGTGCTTGATTGAATACTGAA 131 32 100.0 33 ................................ TGGGCTTAACTGAATACGGCGCTTAAATGCTGC 196 32 100.0 33 ................................ GAAACCACCAACGGCGTACGCTCTGAACAGCGT 261 32 100.0 34 ................................ TATTGGGGCCAAGATGACTGCAAAAGCAAAGCGT 327 32 100.0 33 ................................ TCATAATCAGCTAAATGCTCGGGACCAACTTTT 392 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 7 32 100.0 33 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4132-3312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000079.1 Pseudoalteromonas rubra strain S2471 contig0080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4131 32 100.0 34 ................................ ATTTGCGGATAGTGATACAGCCACCCTATATCAT 4065 32 100.0 34 ................................ CACGAGTCGCTGGACGCGTTATTGCAGGCGGCCA 3999 32 100.0 33 ................................ ACAAGCCGCGACGGTACCCGTGAGGCGGGTGTG 3934 32 100.0 34 ................................ CGGCATTAGCGGCCGTGTTAGTGTTAGCGTTTTT 3868 32 100.0 33 ................................ CCTGTCAGGGTTATGATAAAGTCTGTGCTAACC 3803 32 100.0 33 ................................ TCCTAGCCTTAGCGTTGTCGCTTCGTACATGTG 3738 32 100.0 34 ................................ CACCGGATAACATGTTGAACCATCAATTTGACCG 3672 32 100.0 33 ................................ AGATGATGCTTGACCAAGACACTCAAACCTATT 3607 32 100.0 34 ................................ CTGGAGCAGCTTTAGTGCCTTTTGAACACCAAGC 3541 32 100.0 34 ................................ AGTATCAAAACATCCAGGGCACCACTATTAAAGC 3475 32 100.0 33 ................................ CAGATAAACCGTTACAGGATCTAGACGGGGTAC 3410 32 100.0 36 ................................ AAAAGTGACAGCGTTCGCCTTCACGTAGTTATTAGA 3342 31 93.8 0 ..........................C..-.. | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.5 34 GCTGCGCTCCCCGCGTGAGAGGGGATTGAGAC # Left flank : TGTTTCCGGGGCGTCACCGTGATGCCCTGATATGACTTCTATTTAATGTCATTTTAGCCTTCATTGACTGGTTCCAGGGCTTGCTATTCTCAATTTAGATTAAGGTTTTGGCTAAAAGTGGTGACTGAAACATCGCCCATGTACACTTGATATGGAAGCTATGAAAACAGGTTTAATTAAACACTTTTTGGCCTGTAAGAAAGATACCGGCTCAAGGCCGGTAGGACGGTGGAGTGGGCGTTTAACTTTAGAGCTCTGCCCTTGCTGTACTGTGCTTTGTCATTGTATGCCTGAGGCCAACTTTCCCAGTCAATCATGTTATTTGCGCTAACCCCTGGTGCTCATAAAAAACCCGGGAGGTTAGCGCTTCTGTATGTTGATGTTTATTATGGTATTGTGTAATCTTGTTGTACAAAATTCGGTTGCGTTTGGCAATTTTGACCTAGGTTAGCGCAAAATTTGGTTTTTGGCCTTGTATAATGCGGGCTTTAAAGCAGGCC # Right flank : GAAGTAACAATAAGCACCGAGCTGGAATACATCCGTGTAGCTTCGCCCATCGGTCATCTCGATAATGGCTCCTGCATTATTCTGCTTTTCCACACCCATATGGATCCATGACCTCACCTCAGCAAGCTGCGATGATCTTTAATCATCGGTCTTGCTTCGCCCGAACAATGATAAAAAATGAGCAATTGTTGACTGTTTTTTATTTACAAGTGTAAATTAAGTGTTTATATTTTTAAGTTCCCAATAAAGGAAAAATAAAGGTATACACATGTTAAAGGTTAAAAAAACACTTTCTATGACAGCGTTGTCTGTTTTGCTTGCGCTAGGCGCGAGTAGTGCGGTTATGGCGCAGCCTGCCGATGCGGGTAGCGATTACTATGAGCCTGAAATTGTCGGAGGTAACCCGGCAAATACGGCCGACTGGCCGTTTTATACGCAAATTTTAAGTGCCAATGGCACCACGGCATTTTGTGGTGGTAGTTATGTGGGTGACGGTTATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCTCCCCGCGTGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1-163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000091.1 Pseudoalteromonas rubra strain S2471 contig0092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1 32 100.0 33 ................................ TTTGTAAACGCTTATAGGCTTAATGCGCACGGC 66 32 100.0 34 ................................ AATATCCAAATACTCTACAGTTGGACTTATATCT 132 32 96.9 0 ........T....................... | ========== ====== ====== ====== ================================ ================================== ================== 3 32 99.0 34 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CTTTTAGGAACCTTGGACCTGTCGTTCAAGGTAATCGAGATTGCTATTTGGGCGGATCTGAACGCAGCAATTGTTCAGCCAATGGCCACACAATGCCAAGCGTTATTAAGATCAGGCCAGCAATAAAAATAGCCAAACTTATTAGCAGCGTAAAAATAGCCGCCAGAATCGGCGCACCTAAAATAGCACTAAGCCAGTCATATTGTGCGGTTAGGTAAACCCAACAGCATAACAGACACCAAGGGAACGAAGTGCCAGGCTCCAACAAGCTTGTGACCCAGCTATCCAGTTTGTTTAGAAGCTTTTCGGGTGTTGCCGTCATTGTTTTAGATCACATTTTAATTTAAAAATTTATTCATTTAATTTACATTCTTGTCTACATAGGCAAAATAAACAATAAATTAAGCGCTAAAAAGGAGTTTTATGCCATTCATTGCCCACCCCGCAGCAACAGGAAGCGAACATCAAAGCGTCCTTACTCATTTACGCGAAGTTAAAGT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9131-9692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000091.1 Pseudoalteromonas rubra strain S2471 contig0092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9131 32 100.0 34 ................................ ACCACCCGTGCGAACATCAACACCCGCTGCAGAC 9197 32 100.0 35 ................................ AGCGGCGCGTTCTTCCTGCCCCTCCCAGTCACCAA 9264 32 100.0 36 ................................ TGTAAGCAATGCAGAGACCAGATAATTGAGTGTGTC 9332 32 100.0 33 ................................ CTTATCATTTTATAGGATATTTACGCGCATGCA 9397 32 100.0 35 ................................ CATATATCATATTTAACTCCCTAATCGTGTAAATG 9464 32 100.0 33 ................................ ATCATCTGAATAATTATGAACCCCAAAACAGAA 9529 32 100.0 34 ................................ CCCCCCCCTACGAGTAGAGCGCTACACCGTTGGC 9595 32 100.0 34 ................................ ATGTGGTCTGGGTCTAACGCCATATCCCCCCCTA 9661 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 100.0 36 GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Left flank : GATATACACTATGATGGTATTGGTGACTTATGATGTTTCTTTTGAGAGCGAAGACGGACAAAAACGCTTACGTAACCTTGCCAAGGTGTGCCTGGATCATGGAGTTCGTGTACAGTACTCAGTATTTGAGTGCGAAGTAGACCCGGCGCAGTGGGTGAGCTTTAAGGCTAAACTATTAAAAATCTATGACCCACAAGTCGACAGCCTGAGATTCTATAAGTTAGGCAAAAACTGGCACAACAAAGTGGAACATCACGGCGCCAAAGCAGCCATTGATATTTTTCGTGATCCACTCATTCTTTGATCCCCAATTTGAATACCTCAGCGCTAACCCCTGGTTCTCATAAAAACCCCGGGAGGTTAGCGCTTATGTATGTTCTTTAAAAATAAGGCTATTTTAAATTACCGCTGGCTTGGCAGTGTGTTTGACCGTGATTTTTATCGAGGTTAGCGCAAATCATGCATTTTTGCTAAGCTGGCTGGGCCTTGGCAACAAGGCT # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 173845-173562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000010.1 Pseudoalteromonas rubra strain S2471 contig0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 173844 19 61.3 35 ------------................... GAGTCGTCTCTACATGGATTGCGTGCGGTTGGTCG 173790 31 100.0 34 ............................... TGGTGGCTGGCACTGGACGACATTGAGGCCGGGG 173725 31 96.8 36 ......T........................ CCTGGAGTGGATCTGTTTGTGCAATGCTTCGGGTCG 173658 31 96.8 35 ...................T........... CGTTTCTTTAGAGTTGTTTTTAAGAGTGTCTTTTG 173592 31 87.1 0 .........T.......A.A..........T | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 88.4 35 TCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : ATGTTTGTCGCTTTGTGTTACCGCGCATTTGATACGGATAAAAAGTGAGGTTTGTGGGTTAAACCATGAGAGTTCGGGTTAGGTATCTGATGAAGGGAGAGACTTTGTGCACACGTCATACCTGTATCATCGAGCAAAATGCGTAGGCAGTCACAGACGTCTTTGGTGAATAGGTTTATAGTGCAAAGCAGGGGTCGTAACACATTAAGATCTCACGGCCAGGGCACTTAAAAAGCAGGGAAGGGGAACCGAGTTCAGATTAGACAGAGCATCAGGCTGCGCATCGCGGCACAGCCTAGTATTCATATCAGGATCATTCAGACAGGTCTTTTTTGAGTGTGTATAAGGTGTAAGAAAAGACCCCCATTCCAATAGCAACAAGAATCAAACCAATAATTTGAACTGTACTCATAATTACCTCCTTAACAGGTCAAGCGATACCGACAAGCGTCGATAACCTTGTACTCATAATTGCAAAAAGGAACCAAAAAGGCAAGCTG # Questionable array : NO Score: 6.49 # Score Detail : 1:0, 2:3, 3:3, 4:0.42, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3843-4291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000100.1 Pseudoalteromonas rubra strain S2471 contig0101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 3843 35 100.0 34 ................................... TCATATCCTGTTTCGTTGTCATAATCCATTTTTT 3912 35 100.0 33 ................................... GTCAGTAGATTGAATGGGATATACTCGAGGTCC 3980 35 100.0 35 ................................... GTTTAGTGTTGTCATTAATTTACTCATGATATATC 4050 35 100.0 36 ................................... GTTTTAAGATCTTTTTGGTTTTCATAGTCGTTCTCC 4121 35 100.0 34 ................................... GGTGTTTCATACCGTATTCCTCCTTTACTTTTGT 4190 35 100.0 32 ................................... GGAAATCTACCAGATAACACTAGATACTCTCT 4257 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 7 35 100.0 34 GTACCGCAAGCCCCGACTTTAGAGGGGATTGAGAC # Left flank : CACACCTCTTCCCGTTATGCGGAAAATGCATGGGTAACCGAAAAGCTGATGGTGCCGGTCAGGTCACCTGGCCTGAGCGATTTTATTACTACTAGTTTGCGCAACTGCCTATTAAATCTCCCCTTCAAATTGCCGCACTAAGCATTATTTCACGCAACTCGCCCACAGAAATCGCGCCAGCTACTTGCGTTCAGACCTCACACTTTTGTAAAACAGCCTAAACTCCATTTCCAATCAATATGCTAAGCAAAAGTGTATTTTTGCATATCAAGTGACATATCTTTTTATTTATACAAATAAATCAATAATTTACAACCATCTATAAAAGCCAAAATCGCACTTTGTCAGTAGCTTAGATAGCATATCATTGAATTTTATACCTTTTACTGGTTTAAGAAGGGTTAAAATGTCAGTAAGTCGGCAGTTTTGGGAACAGCCGACAGGACATCGACATTTTTACCCCCTACAGCCCTTGTACGACGCGGCCTCGATCCGCTATA # Right flank : CCCGTTTATTTGACTGACGGGAGCTCTTTTTTGTACCGATAACCGCTTTTTCTGAGGCGTTAATTTTTTAGGTTCTCGAAAACAGGATCGGACAAAAACTTAATAAGGACATCTGCTTTGTATATAGTAAAATTACTTTTTAAAACAGCCACTCTCGATCAAGAAAAATTCCCTAAATTCATACGAGTTAACCCGGGTGATATAACTTTGAAGTTTGTGTTCGATAACATACGGAATGTTGGTATTGCTGCGGCTCTGTTTTATTGTGGTGCTCTGATATTTAGAGGGGAGCCTCTGCGTGTGTTTTTTGATTTGGCTTACTCACAGGTTTTTGTTAGTTTAGCAATTTGCTTGCTATCATTTGTGCTTTGGAGCCTTAATTTGTTGCAGGCGGCATTTGCTATCATTGGCCAGAAAGAAAGGCCAATTGTGTTTATTGGTATTGTTTTATTCTTGCTTCAAGCTGCTATGGGGATTGTCTTTTTTACACACATTGATGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCGCAAGCCCCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 6735-7389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXYA01000100.1 Pseudoalteromonas rubra strain S2471 contig0101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 6735 35 100.0 35 ................................... TCCAGAAAAAGGGTCATTTTCTTTTCCTTCTGTAA 6805 35 100.0 34 ................................... ATGATGATTTTTTTTAATTCCACATCTTCAATCT 6874 35 100.0 34 ................................... CAAGAAGAAGTTTTTTCATGATTTTTCCTTGTAT 6943 35 100.0 34 ................................... CCATACGAGTAATTCAATTGAGGTTACCATATTT 7012 35 100.0 35 ................................... TCTTAGTTTCGATGCGATTCCCCCCATCATAAAAA 7082 35 100.0 33 ................................... AAATTAAGAAATCAGCCTCTTAACTGAAAACGC 7150 35 100.0 33 ................................... TTGATAATATCCACATAAAATATGGATGCTTGT 7218 35 97.1 35 ..............................A.... GATGTCGTTTTACAGACATCAGGGGGATGTTTCAT 7288 35 97.1 33 ................................A.. TGATAAGCAGGAGCTGTCATTTCGTGGTATTTA 7356 33 88.6 0 .........................T..--...C. | C [7381] ========== ====== ====== ====== =================================== =================================== ================== 10 35 98.3 34 GTACCGGAAGCCCCGACTTTAGAGGGGATTGAGAC # Left flank : AACTTTTCTTGTCCTTGATGCGTTATTGTTTTTCATTCCTATAGCTATCTCCCTGTAGGATGGATAGCGAAACTTAACAATAAAAACATATTGCTAACAAGAGAAAAGAGTTCGTTTTGTGTCTGCAAGAGCATTTTATTAAAAATTTTATAGTAAGCGGGGTCATCGTGTGAAAAACCTTGCGTTCAGACCTCGCACTTTTTTGTGAAACCAGCCTAAAACTCCATTTCCAATCAATATGCTGTGTAAAAGTGTATTTTCACACTCCCAGAGACATATCTTTTGATTTATACAAATTAAATCAATATGTTACGACACACCACCAAAGTCAAAATTACATTTTGTCAGTAGCTTAGATAGCATATCATTGAATTTTATACCTTTTACTAGTTCAAGAAGGATTAAAATGTCAGTAAGTCAGCAGTTTTGGGAACAGCCGACAGGACATCGACATTTTTACCCCCTACAGCCCTTGTACGACGCGGCCTCGATCCGCTATA # Right flank : GCCCGGAAAAAGCACCGCTTTTTCAGGCTCGATGAGTGAAAATCATGCGTTTTAAAAAGCACCGCTTTTTGCATG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCGGAAGCCCCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //