Array 1 51709-51310 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018205.1 Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 51708 36 100.0 33 .................................... CTTCCAGTTGCGCCACGGTCGCGATTGCATCAA 51639 36 100.0 35 .................................... TCATTGCACCTTTAATAGGCAAGCCAAATGCACTT 51568 36 100.0 36 .................................... ATACGCCATTTTCCATTAGCAGGGTTATAGGTTCGA 51496 36 100.0 37 .................................... GATGTTGATTCCTTCTCCCGAATTAGGGTCGGTAATG 51423 36 100.0 42 .................................... CGCAGTGCCCTCAATGATATCCATCAGTGGATCCGCGATATC 51345 36 94.4 0 ............................G......A | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 99.1 37 GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Left flank : ATTGAATGGAAACACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAGGTCTCCATTGATGGGGGCAAACAATTGAATGAAAGCTCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACC # Right flank : AACCGGACAGCTTAGTTCGATCTCATTCCTGAATACTGTTGCATCATCAAGTCAGCCAGGAGCCAACCTCCCTCAACCTGCAATGTTTGATGCACCCCTTCCATCACTGTTGCAGCAACAACTAAACCGCTTGCTTTCGTCCAATCAAACCGACGGCTGAAGCCATCAGGGATCACAGAAGACGATCGTGGTGCAACTGATAAATTCCAACCCTCTACGATTGCTCGATAAAGGTAGCCAACTAGATTCTGAATCGTGCGCGGCTTTTGCTAATCTTTTAAATAAACGATCGCAGGTTCAACCCGCTCTGAGAATTCAGCGATCGCTCTAGCTATTTAACTTCCGAATATTTCCCAGAACCAGCTGAGGCAGTACAGTCTGCCTTAGACCTTGGCACTTTCTCCTCAAAAGCTTGATCGAACTTGAGTCATGAGTTGATCAATCGCTTTAAGATCTGTGCAACAACATGCAGCTCATTGCCTTCGACGGTACTCAGAGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 53638-52114 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018205.1 Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 53637 36 100.0 42 .................................... AAGAGTCGCTTCTTTAGTAAAGAAAGCATTAAGCTCAGCTTC 53559 36 100.0 38 .................................... GAGCATACTTTACCAGCCCATTGAATTCCTTCTACAGT 53485 36 100.0 41 .................................... AAGGTTTGGATTTGCATTATCGTGATAATGCTTATTAGCTT 53408 36 100.0 38 .................................... CATTTCTTCTAAAGTAGAAGGAACAGGTTCGAAGGGTT 53334 36 100.0 41 .................................... ATAAGATCACCCACAAAAGAAAGCTGATATTTATTACCTAA 53257 36 100.0 41 .................................... CCGGGATTAATCCCAGCCAAACAACTCCAATTTCACTGGCT 53180 36 100.0 40 .................................... GTCAGGGTTGATACCATACGCACCAAGATATTCTCTCCAC 53104 36 100.0 41 .................................... ATAATTTGGGGGGTAAGCTGCGCCAGCAGCAACATACGGTG 53027 36 100.0 49 .................................... TCACTTGTATTCCTGTTGAGAAATATAAGGAAGCTGCTCAAAATGTGAG 52942 36 100.0 41 .................................... ACACGATCGCCCCTCTTCTCTGTCAATCCCTCATAATACGC 52865 36 100.0 46 .................................... TTTCCACCTCTTTACGAGAGGAGCCAATCAAAGCTTCGATTTCTGA 52783 36 100.0 40 .................................... TTGCTGTATACATGGATCTCTAGCGTTTTTCTTGTGGTAC 52707 36 100.0 46 .................................... GCACAGACACTTACCTCCGGGGACAATCCCGTAGTGATCGCAGTGG 52625 36 100.0 43 .................................... TTTAACTGGTTACGCATGAGCGTAAGATGTTGGATGTCTTCCG 52546 36 100.0 39 .................................... CTTCAATCAACATCCGGGTGGCTTCTAATCGTTGCTCAA 52471 36 100.0 52 .................................... TTGAATAATTTGCTGAATAAACTGAGATTTTTGATGAGCTGTCCAATTGCAA 52383 36 100.0 41 .................................... CCCTACCCAAACAAGTCATCAAGTCCGCCAAGATTTCTGTT 52306 36 100.0 39 .................................... CATCGATCGTGCGTCGAATCGTCGGATGATTACGAAATT 52231 36 100.0 46 .................................... ACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAG 52149 36 94.4 0 ...............................A..G. | ========== ====== ====== ====== ==================================== ==================================================== ================== 20 36 99.7 42 GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Left flank : ATCTGATTCGGTGAAGTGGAAGCGGGATAGATGCTAATTTATGTAGTGACCTATGATATTCCGTCTGATAAGCGGCGGAAGAAGATAGCGGATTTGTTGGAAGGATATGGGCAGCGGGTGCAATATAGTGTGTTTGAATGTGCACTTTCGGCTGTGAAGTTCAAAGAGCTTCGGAAGCGATTGCAGCAGCGCATTAAGATCGAGGAGGATAGTGTGCGGATGTATCCGATTTCGCAGCAAATGTTGCAGCAGGTTGAGGTTTGGGGTGGAGTGGAAATCGTGGAACCGCCGGGATCAACGATCGTCTAGTGTCGTATTTGCTGCGAGGCTCAGGAGATTTGCTTGGAAGATTCATTATTTCGTTGGGAGCCTCGCAGCCTTTTGTAATAAGAGTTTCAGCGTTTTTTTAGGAAGTCAGAGAGCGCATTTTTTTTGTTTTTTGCTTGACCCTCGCAAACCGAGCCTAGACATCAAGCAGGGTATAGGTTTCAATAGGAGGG # Right flank : TCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACCGTTCTCACTCGTTGGGAACCACAATTGAATGGAAACCTTCCAGTTGCGCCACGGTCGCGATTGCATCAAGTTCTCACTCGTTGGGAACCACAATT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 59006-55489 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018205.1 Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 59005 36 100.0 40 .................................... CAACTCTTACTTGCTGGAATGGTGTAACGCTCTCATGCCA 58929 36 100.0 37 .................................... TCGAGAACGTAACGAGAAGCAACGGACATAGAGCCAG 58856 36 100.0 38 .................................... CTACGATCCGGCTGACTACTAACCCCAACGCGCAGCAA 58782 36 100.0 41 .................................... TTCTCAGTTTACGATTGTGGCGTGATTGTGGCGTGATCGGG 58705 36 100.0 48 .................................... CTGAACCATTTGTAACTTACTCAGCTACTTTTTAATTCTTATTTTAAG 58621 36 100.0 37 .................................... CTCTTCCCTGTCTTCCGTTCCGCTGCAACGTCTCGAT 58548 36 100.0 44 .................................... TCACCAGAGAATGCCATCTGCATTAGTGCACCCCCCATATTCTA 58468 36 100.0 43 .................................... TGTAAAGCTCTTTCATAGCTTCAAATCCTTTACTGAAGGTCGG 58389 36 100.0 40 .................................... ATGAAGCGCTTAGTGCCTTTGCTTTGAAACTTCAAGAATG 58313 36 100.0 43 .................................... ATTTTACGCCCTTCAGAAAGAATCATTTTTGACTCAATAACTT 58234 36 100.0 43 .................................... CGCGGATGTTCCCCGTCTTTGAGGGCATTCCGGTGGTCATGGA 58155 36 100.0 42 .................................... GTTGGTTTGTAGCGATTTGGCAATTGATACATCGCTCTCGAT 58077 36 100.0 38 .................................... CTTGCCATAACTGACAGACAAGGTGTCAGGGGATTTGC 58003 36 100.0 40 .................................... GCTGTTTTTCTCGACCTGGAATTAGAAGCCTAGCTGGAAA 57927 36 100.0 40 .................................... CATCAACTGCGGTGTCAGATTCTAAACCATAACCATTGTT 57851 36 100.0 44 .................................... AGTTCTGTCTATGTTCGTGACCGTTGTTTCTAATCCGCTAGCAA 57771 36 100.0 52 .................................... TTGATGCATTCGTAGGTCGCAGTTCAGTAAGTGGTGATCACTTCGAGCGTGA 57683 36 100.0 40 .................................... TTGGGTAAAGGGAGCTGATCGGGCGTTTGAATCGACTGTA 57607 36 100.0 38 .................................... CCACCCACACGGGGGGACGGGCGCTCCACCTATATGTA 57533 36 100.0 45 .................................... GGAATGGATCAAAGTTGCCATTTGCATCCAAATAGATAGGATCAA 57452 36 100.0 42 .................................... ACGGTTAGCGTTCTGCTTACCAAAGATTTTCCAAATAGGCAT 57374 36 100.0 48 .................................... TTCAAACTGCTCGTCAAATACCTCATCCCCTGCATGTCCCATCTCTAG 57290 36 100.0 36 .................................... TCATTAATCAGCGAAAGACTTCTTACTTGCGGCGGT 57218 36 100.0 36 .................................... TCACTTGCAGCCGCTTTGATTTCGGCTAATTCCTGG 57146 36 100.0 37 .................................... TGAAGTTCAAAGCGAGTCCAACTTGTTCGAGTGTTTT 57073 36 100.0 36 .................................... ACAGTTCAGGCAACGAAGCTTGCGGCGAATTGCGAC 57001 36 100.0 34 .................................... ATCACAAGCTTGTATCCAATAGAAGGTGTACCCG 56931 36 100.0 45 .................................... TTTATGGGTTTTTATCGAATAGATTGGGTGATAAAGGCTTATCTG 56850 36 100.0 37 .................................... CAAATTTGTATCAGCAGCAATACTAATTAGTCTTTCA 56777 36 100.0 40 .................................... GCCAGCACAGCACACATGTCTTAGCCTCAAACGTGGGGAG 56701 36 100.0 35 .................................... TCCAAGAACAGAACGCAAAATCTAATTGTTTTAGT 56630 36 100.0 42 .................................... ATGAAAGATGTGCAGATTATGAGTGCCAAGATTGCATCACAA 56552 36 100.0 39 .................................... CCGCGCAAATTGCTCACTGGACACAAACGCAGAGCGAAT 56477 36 100.0 39 .................................... TACTTGTATTGCTCGAAGTTGATCTTCGGTGCCGTGAGT 56402 36 100.0 42 .................................... TAGATCTGAATCTAAGATCAAGAATCTGAATTAAGATCTGAG 56324 36 100.0 36 .................................... CTAAGAAGGTAGTAGTCAAACGCTCCACCATACGAG 56252 36 100.0 48 .................................... TCTAGAAGTACATTATTGTTAATTACTGGCATTTAATATCTACCTCCA 56168 36 100.0 40 .................................... TGAAATATTAAATAATGGATGCTCTGAAAGTAAAGCTACA 56092 36 100.0 39 .................................... CACGATCATTGCTATTACCAGAGCCAATAAAATTGATGC 56017 36 100.0 35 .................................... CTGTATCTTTTCTAGCTTGATCTAATTTCTTTGAT 55946 36 100.0 39 .................................... TAGATAAACAGGATTGTGTCTGCATCCTGTTCAATGTTG 55871 36 100.0 41 .................................... GAATCGAATTGATGTAATTCTGCCTTTCGATGGTCATAAGA 55794 36 100.0 234 .................................... TGAGCATTGAGAATTACTCTATAGATCAAATGAATGGTAGCGATACTGATTCTCAAAAACGTCTGAGCCAGCATTTTCATCTACCAGCCCATTCTCTAATCAAGCCCTTACAAGGCGTCCTTTCAGTCACAATCAGCCAAACCAGATCTAAGTAACATTGATGTAACAAATTTATCCAGTTTCCCGCATTGCCACTACAATACCTTTGGCGAAAGCGCAGTTAGAACGATCAGG 55524 36 69.4 0 ......C.C....C.AA..CC.C.....C.A...C. | ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 44 36 99.3 45 GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Left flank : CTTGTTTCATCAGTTGAAAGGTTTAGAAGGACAAGAAAAAGTATTTGAGAACTGGCAGTCACCGAATGAGCCAAAATGGAAACAAGATCCTGAAGGTCATTGGAAGCTGAGGGTGTTGAAGTGTTTAAACTTCATCTGTGGAGAAAACTTTAGCTCTCTTGAAGAAGCCAGTTTACTTGTGAAGGTGCATCAGAAAATAGAAAGGGCGATCTCTCAACTATAATGTTGTTCCGTTCTGATGAGTTCGATCGCTTAAATCGACAGATTTTTCAACTGCTCGATCGTTTAGTTTGATGGGGATAAGTTTTGAGATGGAGGGGGTGCGAGGCTGGGGCGATTTGGCTGAAAGGGTGATTGTTTCGTTGGGAGCCTCGATGCCTTATGGGATAAGGGTTTTGCCGCATTGTTTGGGGTTAAAGTTGATGAAATTATTTGTTTTTGGACTGAGCCTCGCAAACCGCTGCTGGACGTTAAGCGGGGATTGAGTTTCAATGGAAGGG # Right flank : TGCGCCAGTTAGTTCGATCGCTGTACAACAATTTTTCCCACCCGCGATCGCATCACTCTATCTTTCGCAATTTGATCAGGGAGCACAGACAATGATCATCTACAGAAAAACCTCATGTATCTTTCAAATCGCGCCCTACAAGTTCGCAATGCCTCGATTGCCGGAATCAGCGGAGCCTTAACCTTAGTTATTCTGCTGATTGCTCCATTAGGATTAGCAGCCGTCATCATCAACACCCTGCTTGTCACGATCGCAACTTTTGCCACCGGAACTGTCGTCGATCGTGTCGTCATTTCAATGCAGCGCGATCGTAATTTACCTCCAACTGCTGACCTTCGCAGACGAGAAAGCAGCAATGTGGATCGATATCGGTAGTAGGACGCAGTCGTGAAAACGCTCTATGTTTCTCACCAGGGTTGCTATCTATCACTGCGACAAGAATCAGTCTTGATCAAACGAGGTGAAACGATTCTGGATCAAGTTCAGTTGCCACTGCTAGA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1072291-1072543 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018203.1 Leptolyngbya boryana NIES-2135 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1072291 37 100.0 36 ..................................... TCGAGAATGAGTTGGGGAAACCCCACCAATGCTCGT 1072364 37 100.0 34 ..................................... TTGGGATGATCAGCAGCTCAATCAGTACGCCGAT 1072435 37 100.0 35 ..................................... AAAAGATGATGCTTGTTGTGCCAGCTGATCGGATT 1072507 37 91.9 0 A....A.................G............. | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.0 35 GTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Left flank : TGAACTGTGAAAAATGAGGGTCAGTTTGGTCGTTGTGAGACGACTGTGCTTTCCGACCCTGGTAGCTGCCCGCTCGCTGACTGCCATCCTGGTACAGGTTTCGATTTGAGATTTGTGTGGGGATGGGAAGCTGTAGTTGTGGAGCCCGTTCTTCAACTATAGCGCAGGTGCGCGCCCAGCAGAAGTGAGTCAAGCCTCCACCTCGTGAAGGCACAGGGGCATTATCTCATCAATTACTTGGTGCTGATAGTGTGACTGAAGTTGCAGCTACTGAATCGCCTCCGAGCAAGGAGGAGTCCTCCAATTCTTTTTGGCAAACCGCAGCGAGGGCAAAATCCCCGGGAGGTTCGCCAAACCGCTAGGAGCCACTACTAGTGAACCTTTCATCCAGTTGAGGTATGTCGAAGTAAGTTTTCCAGAAAGTTGAAAGAGTACTTTTTAGCGAGGTTTGCCAAAAGGCAGCTTGGAAAGCTTACAGGAGAAGAATTCTAGCGCTGGGA # Right flank : GCTCAGAGCAGAAAGTATAAATACTATGAGCTCAATGTGATTGTTGAAACATCAAATTCAATTAGCCTCAGCAAGAGGTAGCAAGTTGAATTTATAAACTACTTAACTACTAGCAACTTAATAAATCCAAACCAAAAGAGCTAACACACTAATATTTTCTATTGGAGGACTGAAAGGTGCATTCGATTCGTAATTGGTCAGCATTCTTTCTTGATTTCAAGTGACATAAATCTGCAAGTCGCATTATTGAAACAAATAGCGACATTAATCTGCGAAGAGCAGGGATTTACTAATTTGCGACACTAATTTGCGAAATGATATCCATATTGCCAAAAATCATCAAAAACGACATTAATTTGCGAATTGCGACATTTAATGTGCGAACGTACATAAAAAGCCGATGATGGGATTTGAACCCATGACCTTTCGATTACGAATCGAATGCACTACCACTGTGCTACATCGGCAAAAGGCCTCATGCAGTATAACAGATAATCGTT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 4986345-4985787 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018203.1 Leptolyngbya boryana NIES-2135 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4986344 37 100.0 36 ..................................... ATTCGGAAACTCCCTGCACAACTCGGCAAATGCCCG 4986271 37 100.0 37 ..................................... TCCCCTTAACTAGGCATGATATGCGATCGCTGCTTAG 4986197 37 100.0 36 ..................................... GCTAGGAATTTATCTGAAAGATATCCCTCGACTGCG 4986124 37 100.0 43 ..................................... GAGAAGCCAAACAGACTTAAGCCTGCACAAGCAATTCACTCAA 4986044 37 100.0 37 ..................................... AAAGTATGAGAAAGTTTCTGACGCAATATCAGAGAAC 4985970 37 100.0 36 ..................................... CTCAGTCGAAAGTATTGCTGAGGCGTTGGGGATAAA 4985897 37 100.0 36 ..................................... GGCAAGGTTATTGCCGTCAACGAGCAGTATCAACAT 4985824 37 100.0 0 ..................................... | G [4985789] ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 100.0 37 GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Left flank : CCTCTTTCAGGCACTCCTCAAGAGAAAGCAAGAAATTTAGCGATCGCAGCATACCAATCTCGAAAATAGAAATTACTTGCAATTAGTTCAAATGTATTTTATAAATAGAGTGCGCCGTGGTTCATGCTAGCAATAGCCCCTGTGCCATCGACAATTACGAGCTAGTTTGACTGTCGGAAGATAGTCTTGCTTTCTGGCTCAGGTTGACTGTCTACCTCGAAGTTGGGTGCGCTCCCAGCAAAAGGGTGCGGGTCTACCGCAATGCTGGTTAGCCAATCTCACCTCCGAGCAAGGAGGAATCCACCCCTAACTTTTAACTTGTTGGCAAACCGAAGCGAGGTCAAAATCCCTAGGAGGTTTGCCAATCCGTACAAACTAATCCCTTCAGCAGCTTTCCACAGCATAAAGCTGCTTCTTGTCCAACAAAAAGTATCGGATTTAGAGGGGTTTGCCAAAACCATGTTTGAAAAGCACACTATGGCTGCACCTTGAATGGCAGG # Right flank : TAACTTAGTCTTTTGACAACTTTAATAGGCACAATCTTTCGGTTAACAGTGGGTGGATTGAAAGGACTGCCTGACTCGGGGTTTTAATTTAGAAATATTTGCCCCTCGCTATAACGAGCAGAGTTAGCATTCGTTTTAACTGGGTAGAGTCTGTACTGTAAAATGTTGAAGTGGATAAGAATTTGAATGAGCATTCAACTGCTTGAAGCTCTGATGACAAGAATTTGTTAACGAATGATTTCTTACCCCTCGACGACAAGAAGCTGTTAAAACGACACTAAATTGTTAACGACGACATCAATCCGTTAACGACGACAAATAAAGTGTTATTCGACAACAATCACACGAATTTAAACAAAAAATTGCCTGACTCTTAAAAGCCCCCAGAGTCAGGCAGTCTACCTGTAAGGCACGCCTTTAACCGGATACACCAAACAAACTTAGTTGCCCCCTAGTTGCTTAGCTTTTCCGAGTGCGTTCCTCAGATTTGAATCTATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA //