Array 1 1867376-1871674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063993.1 Xanthomonas translucens pv. undulosa strain XtLr8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1867376 31 100.0 34 ............................... CGGTCCGGCTGCGCACATTGGCCTTTGCCTCATC 1867441 31 100.0 33 ............................... GCCTGCAGATCGCCCGAAGCGGCCAGCAGGGTG 1867505 31 100.0 35 ............................... CGCAGCTCTTCTAGCTGAGCCTTGGCGATGTCGAG 1867571 31 100.0 35 ............................... CCGATATCGCCGTGGTCTTCCAGGCCCGCCGGGTG 1867637 31 100.0 34 ............................... TCTGTCCGCCCACAGCCGTGCGCTGTACTCGCTG 1867702 31 100.0 35 ............................... TCGTGGTCCCGACCGCCGCAGTTCGGGCAGGTGCG 1867768 31 100.0 37 ............................... GAGGCGTACCGTGGTGGAGTGTGCCCGGGCTAGGACA 1867836 31 100.0 35 ............................... GAGCGCGCGCGGGTGGATGCGTTGTTCGGAAGCCC 1867902 31 100.0 33 ............................... CCGATTGGCATTCGATCCACAGCTTTTTACCTG 1867966 31 100.0 35 ............................... ATCAAGTATTCCGCCAACTGCCCGTCCCAAACCTT 1868032 31 100.0 36 ............................... CGAATTAAATTTCCCTACCTGTACCCCAACGCCGCC 1868099 31 100.0 34 ............................... CAGCCCTGGCTGACGGACACAATCCGCTCCAGTT 1868164 31 100.0 35 ............................... TTCGGAGGCTCAATTGGTGTCTCCATTGCTGTTGC 1868230 31 100.0 34 ............................... CAAGACCGCGCGAGCGCGAGACGCTTTTTAGAGT 1868295 31 100.0 34 ............................... CAGCGGCATGTGTGGCCGCGTGCTGCTGCCGTGC 1868360 31 100.0 35 ............................... TCCTTTGCCGCTGCGCCTCCTTGTGCGCTTGTACA 1868426 31 100.0 35 ............................... TGGCCCACCGCCGCGGACACCGATTGGATGTTTTG 1868492 31 100.0 34 ............................... TGCTAGTTAACGCCGATGTGTCGGCGGTCCTGCT 1868557 31 100.0 34 ............................... GATATTGGACATTTTCAACTCCTAATTAGTTAGA 1868622 31 100.0 33 ............................... GCCTGCAGCTTCCCAAAAATCGGCGCCTGCCCA 1868686 31 100.0 34 ............................... CGTGTGCCTGCTCATCCTGACGCCTCCTGCGCAG 1868751 31 100.0 36 ............................... CGCATGTACACCTTCTTAGAAGCTTGTGGAGTATCC 1868818 31 100.0 34 ............................... TTGGCGGCGATGCTTGCCGCAGGGATCAAGCCAG 1868883 31 100.0 37 ............................... GGGATTTGGTGTTGCGTATTTGGAACGCTGAGTTGTC 1868951 31 100.0 34 ............................... AATATGTACACCTTCTTAGAGGCTTGTGGAGTAT 1869016 31 100.0 37 ............................... CTTGGTACGGAAGAGGAGGCTGAGGAAATGCGTCGGC 1869084 31 100.0 37 ............................... TACAAGCGCATCCGTAGTGGGAAGCGCAAGCCGCCGC 1869152 31 100.0 35 ............................... GATGGACGCTGAAGCGATGCTCCGCGACGACCTGG 1869218 31 100.0 35 ............................... TGGTCGGGACCGCGATGTTCGACGCACAATTTTAC 1869284 31 100.0 33 ............................... CAGATGCGCAACCACTCAGGGCCAGCATCGCAA 1869348 31 100.0 35 ............................... CGTTACATGTGTAACCCGTGCATACTCTCAGCACG 1869414 31 100.0 35 ............................... AGTGGCTACTGACCGCCAGCCTGTAGTCGTTGAGG 1869480 31 100.0 34 ............................... TCACACCGGTGTGGGATTGACGTGTCGGCTATGG 1869545 31 100.0 34 ............................... ACCATGGCGAGCGCAACGGTCCTCGATAACACGG 1869610 31 100.0 35 ............................... TCGTGTACCTGCTCACCCTGGCACCTCCTGCGCAG 1869676 31 100.0 34 ............................... AGACTACGAATCTGAATGTCGCAGGTTCGAATCC 1869741 31 100.0 34 ............................... CAGCTTTCCGGATGGGGCCAGTGTTTTTGCAGGC 1869806 31 100.0 35 ............................... AATTTGACGCGAGACAACCGCAACCTCGCGATCTG 1869872 31 100.0 36 ............................... CAGAATCTGGTTAGCGCACCGGTAGGCAGCTACATC 1869939 31 100.0 34 ............................... GTGAACGCGCCGACAACACGGTCCATCGCCGTGG 1870004 31 100.0 34 ............................... ATGCAGTCAGTCCTCTCCGATTTCGCCAATATCC 1870069 31 100.0 35 ............................... AGGTACGTGATCGAGAATTGCTTGATCGTGTCCGA 1870135 31 100.0 34 ............................... GCCAACGACGTGACCCGAGCGCGCGCCCATGCCG 1870200 31 100.0 34 ............................... TTGCATTCGGTTGGAGCATTCAAACTCCGGGCCT 1870265 31 100.0 35 ............................... ACGATGTTGACCTGTTCGGGCGCGTCGGCGTAAAG 1870331 31 100.0 34 ............................... TCGGTCGTGCTGCGTGAACGCGACGTAGACATCA 1870396 31 100.0 35 ............................... CAGCACCCAATCCAGTGTCAGCGGTGCGAGCACTT 1870462 31 100.0 34 ............................... AGGCCGTAATCCATCGCGACGGCGGGCGCAGCCG 1870527 31 100.0 35 ............................... CGGTCACCAGCAGCGACGCAGCGCGCGCATCGCAG 1870593 31 100.0 33 ............................... TGGCTCGCGATGCTGGACGTAGCGCCGATCGAG 1870657 31 100.0 35 ............................... AACAATGGCGGTCCGTCAGGTTGGCTGCATGCAGC 1870723 31 100.0 33 ............................... CTGCAGCGTGTGCGACGCGCCGGCGCCGAGCGC 1870787 31 100.0 34 ............................... ACGCGCGCCCACCGCGACATGCGCTCGCAGGTGG 1870852 31 100.0 36 ............................... TTGACCTCCGTCGCTATCTTCGTAGCGGCCATGGGC 1870919 31 100.0 33 ............................... TCAGATTAAGCGCAGGATGCGCGAAACAAAGGT 1870983 31 100.0 35 ............................... ATTGAAAACGAGCATGTCACCAAATCCCCAGCGTC 1871049 31 100.0 35 ............................... GGCTTCGCGCCGCTGGTGCCGACCGTTTCGCGCCT 1871115 31 100.0 34 ............................... CACGAGGACCCAAGGAGTAGCGCCTACTGCCACC 1871180 31 100.0 37 ............................... TGGGCGTTTACCGTAGTGCGGCCGTCTATGCTTTCGA 1871248 31 100.0 36 ............................... ACGGAGGCGCTGCTAGCAAGCATGCGCATGCCGCTG 1871315 31 100.0 34 ............................... TCAGCCTGCGTTGCTTCCCGCAAGTTAGAGACCC 1871380 31 100.0 36 ............................... ATGGCTCAGTCTCGCTGGCGGGTGGCCGGTGTGGCC 1871447 31 100.0 35 ............................... ATATGCCCGGTAGCGGCCGTCTTCTCCCATACCCA 1871513 31 100.0 33 ............................... CCGTACTACGTCACCGGCAACTTCGAGGGTGGT 1871577 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 1871643 31 87.1 0 ......CG.......C.........G..... | C [1871668] ========== ====== ====== ====== =============================== ===================================== ================== 66 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CTGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //