Array 1 115011-114082 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABK01000108.1 Pseudomonas aeruginosa strain HUM-278 PA3_E6_NODE_17_length_115092_cov_33.2604_ID_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115010 28 100.0 32 ............................ AGGTCCCAGCGGAGCGACTGATGGGCCACCTT 114950 28 100.0 32 ............................ CGCACCGTCAACGGCCAGAACGGCCAGCAGCA 114890 28 100.0 33 ............................ GGAACCTCGAAAAAGACCGGCAACGCCTACGAC 114829 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 114769 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 114709 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 114649 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 114589 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 114529 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 114469 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 114409 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 114349 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 114289 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 114229 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 114169 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 114109 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 83-1130 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABK01000029.1 Pseudomonas aeruginosa strain HUM-278 PA3_E6_NODE_40_length_48761_cov_28.6845_ID_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83 28 100.0 32 ............................ GTGGAGGCCGCGTGATGCTCGCGCCTACTCTC 143 28 100.0 32 ............................ AGGAACGCCACCAGGGCGCAGACGGCAACCAC 203 28 100.0 32 ............................ TACAGGCGAGATCATCGTGCGCCTTGCAAAAG 263 28 100.0 32 ............................ ACCTGCATCCAGAAGGGGGCCGAGGTGATGTT 323 28 100.0 32 ............................ GTTCGCCGGGCCTTCGTCACGGCCCGTAGAAA 383 28 100.0 32 ............................ TGGAAGGCCCTACGAGAACTCGCCGGGCTAGA 443 28 100.0 32 ............................ AGCAGGAGACCGGGGCCTTTGCCCCGGCGCTC 503 28 100.0 32 ............................ ACTCAGTCGGCGCGCTCCCTGGCGAAGGGACA 563 28 100.0 32 ............................ GCCCGCCCCTCGGCCGACACGTACCGCAGGAA 623 28 100.0 32 ............................ GAGCAGGTTCAGCCGGCTGTTGCGCCTGGTGC 683 28 100.0 32 ............................ AGTACCACCGCCCTCCCCTGAGCCGTCACCAC 743 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 803 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 863 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 923 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 983 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 1043 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1103 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCTCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTTGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11413-10004 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABK01000029.1 Pseudomonas aeruginosa strain HUM-278 PA3_E6_NODE_40_length_48761_cov_28.6845_ID_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11412 28 100.0 32 ............................ ACCCGTACCGCCATCGCTGCCACCATCACCAC 11352 28 100.0 32 ............................ ATGCTGAGGGTAGCTACAGCACGAAGTTTCGC 11292 28 100.0 32 ............................ TACGTGATCCTCGCCGAAGAAACGCCGATGCC 11232 28 100.0 32 ............................ GAACTCTATCCGGAGACACACGATGAAGCGAA 11172 28 100.0 32 ............................ TGGACCGCTAGCCCAGGCGATCCGGGACGACT 11112 28 100.0 32 ............................ CAGCGGTTCCTGGAGCAGTTGGATATCAGGCC 11052 28 100.0 32 ............................ AGGGTCAGGTCGTCGGCGTGAGTCGGCACCCA 10992 28 100.0 32 ............................ GATCACCAGCGTGACGAATCGCAGCCAACCCA 10932 28 100.0 32 ............................ TCAACGGGGATGCTAACAGCCAGTATCATACC 10872 28 100.0 32 ............................ ATGAACACAGACTCCGAGGGGCGGCCAGAGCG 10812 28 100.0 32 ............................ AGCCATTCGATGTGACCCGTAACTCGCTGGTC 10752 28 100.0 32 ............................ TCAGGCGAGTCGATGCCGGCATCGAGCAGTTC 10692 28 100.0 32 ............................ CACTCCAAGCGTGATCATGGCGGCGTTTCGCA 10632 28 100.0 32 ............................ GATCCGCGTGTCTCGGTGCTGCTGTTCAACAC 10572 28 100.0 32 ............................ TCGAGGTCGGCCAGGTTCAGGCGGTTGACGTC 10512 28 100.0 32 ............................ ACCGGCGCCGACTGGCCTTCGATCCAGATAAC 10452 28 100.0 32 ............................ TTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGG 10392 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 10332 28 100.0 33 ............................ CTGCCCCGCTCTACACCCAGCCTGGGGCTTCCT 10271 28 100.0 32 ............................ TAAACGACCGCACAGTTACTCAGTACGTCGAC 10211 28 100.0 32 ............................ GCATTGCACGCTGGTGGGCAACGGGTGCGACC 10151 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 10091 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10031 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //