Array 1 2001437-2002396 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UHEQ01000004.1 Streptococcus agalactiae strain NCTC8185, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2001437	    36	 100.0	    30	....................................	TAATATCATAATTTTCCTCCTACTCCCTCA	
   2001503	    36	 100.0	    30	....................................	TTGTAATTTTGATACGTATTTTCGTAGGGT	
   2001569	    36	 100.0	    30	....................................	CTACTATCAAACTTGCTATTTTATGTATGT	
   2001635	    36	 100.0	    30	....................................	AAAAGGAAAACCGATTGGGCTTCCTTATCA	
   2001701	    36	 100.0	    30	....................................	ATCTAAGTTACAAAGCTTTCTCAGATATCG	
   2001767	    36	 100.0	    30	....................................	TTTAAATTCTTGATATGTTTGCCTCAGTGT	
   2001833	    36	 100.0	    30	....................................	TTTAAATTCTTGATATGTTTGCCTCAGTGT	
   2001899	    36	 100.0	    30	....................................	TTCTACTTGTCGTAGCACTTCAACACCATC	
   2001965	    36	 100.0	    30	....................................	AATGGAAAGCGAAGAAATCCTAGAACAATC	
   2002031	    36	 100.0	    30	....................................	AACTCAACTATATGCCACCAACATTTGACT	
   2002097	    36	 100.0	    30	....................................	TTGTATCTGCTGCAGCTTTTGCGAACACAT	
   2002163	    36	 100.0	    30	....................................	TTCTCATGTTGCGGAAGCTGCTGGTCAGCT	
   2002229	    36	 100.0	    30	....................................	CTTACACCAGGCATCTAAGGGGGTAATCTA	
   2002295	    36	 100.0	    30	....................................	CTATATTTACACAAGACTCAGATTATATCA	
   2002361	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGTACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACAATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAGAGTTAACTAATTTTCATGCTATCACAAAGTTTTAGAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTTAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAAGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGAATCTCACCTATTAATAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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