Array 1 3147163-3144131 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020595.1 Acinetobacter baumannii strain USA15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3147162 30 96.7 30 .............................G ATCGTGAAGGTGAAGCTATTGCTTATCACA 3147102 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 3147042 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 3146982 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 3146922 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 3146862 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 3146802 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 3146742 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 3146682 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 3146622 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 3146562 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 3146502 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 3146442 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 3146382 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 3146322 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 3146262 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 3146202 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 3146142 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 3146082 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 3146022 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 3145962 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 3145902 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 3145842 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 3145782 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 3145722 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 3145662 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 3145602 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 3145542 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 3145482 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 3145422 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 3145362 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 3145302 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 3145242 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 3145182 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 3145121 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 3145061 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 3145001 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 3144941 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 3144881 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 3144821 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 3144761 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 3144701 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 3144640 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 3144580 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 3144520 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 3144460 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 3144400 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 3144340 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 3144280 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 3144220 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 3144160 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 51 30 95.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //