Array 1 253058-255430 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT827126.1 Pseudoflavonifractor sp. Marseille-P3106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================================================================== ================== 253058 32 81.2 33 GTCGT................G.......... TCGTCTTGTGGGGGTGCTGCTCGGTGACTGATA 253124 32 93.8 34 T....................G.......... TCGGACCGGTCTGCGTAATCCGGCTGCAATAGGC 253191 32 96.9 35 .....................A.......... TTATGTGTATGAGGTAGTGGGCATGTTCCTGCGCG 253259 32 93.8 33 .............T.......G.......... TTACACCATTCGTGTCCCTGGCAGTGAACGTAG 253325 32 90.6 33 .............T.......G..A....... TTGGCGAACTAAAACTCTCAATCAGTCTTGCGC 253391 32 84.4 33 ...T.......A.G....A.A........... TCAAATGCGTAGTCACGGCTGGGCGTATCCGTG C,G [253396,253402] 253459 32 87.5 32 G.........A..T.....T............ TCTTAATCCTATTTATAATATACCTTTTTTCA 253524 32 87.5 34 T...A................G..A....... TGTCATTTGATACCTTTTCGGCAACTGTACCCCT 253592 32 81.2 33 G........TG..T.....T.G.......... ATCTCCTGGGCATGGTCTCGGCGGAGCCGGTAG C [253597] 253659 31 84.4 36 A.C......TG..-.................. TGTATCTCGAAGCACGACTAATACGGCTGCCCGTCG 253727 32 84.4 34 T.........A..T.......G......G... TAGTCCGCCAACGCGGGGACCGGACCAGGTATCC 253794 32 87.5 35 T..T......A.G................... TCTGCGTTCGAGAAGATAGGGGGCGTCATTGTTAT 253861 32 87.5 33 A......T..A.G................... TAGGCACGTCCAGTTTTGGAGGATGTCCCTTCT C [253866] 253927 32 84.4 126 ...........A..A......A..A......A TTTATGGGTAGTTTTGAATATGGGATGTGCGAGTTGAAATCGCATTTTGCCGGGGCATTATGATGCCTTCCAGGGTCGCCCTCCCTTGCGGGATGTGAGTTGAAAAAACTGTCCATTCTGTCCAGA C,GA [253932,253945] 254090 32 96.9 34 ...T............................ AAACCTAAAAATATAGTTACTAGAAGATTCAAGG C,A [254095,254105] 254159 32 93.8 33 ..........A.G................... CCCTTGTGGGGCCTCCACCACCACCCAGAGCGG 254224 32 90.6 32 .........TG..A.................. AAAAAGCAACGGTATGGAAAGCATGGACGCCT C [254229] 254290 32 87.5 34 T...A..T..C..................... TGAACCAGTCCCTCAGGCCATCTACGCTGATTAA 254357 32 100.0 32 ................................ CGGGCGGAAGAGTAGACACATTATTTTACGGC 254422 32 75.0 28 ....A.....GTGT...CA..G.......... GGCAACAAGTATCCTGTCACCAGATATA C,A [254427,254438] 254485 32 81.2 32 G........GA..........GT.A....... TCGCCGATACTCCTCATCAATCTACTCATCCA 254550 31 87.5 35 A................-...G..A....... TGAGCATAAAGACGCTACAATACTCGCGGTTAATG 254617 32 84.4 17 ....A.T.................A..A...C AAGCAAGCGTCATCTGG Deletion [254666] 254667 32 87.5 33 .........AA..........G..A....... TTGTTTGGCAAGGGTGCTGCCGGTACTAAGTAT C,T [254672,254684] 254735 32 90.6 34 G....C.............T............ TCGCTGCTGTTCGGCACGCCGCCCGGCAGTCACA 254802 32 90.6 28 G.........A.G................... GACGCAGGTGGTCATTTGATGGATTTTG 254862 32 90.6 33 .....G.T................A....... AGTTTCGAGCATAAGTGTATTGTACTGACACAA T,A [254867,254877] 254930 32 87.5 31 .........AG.......A..G.......... AGGCACCGTTATCGGGAAAACCGCCAACGGA C,A [254935,254947] 254996 32 87.5 33 A....G....A......C.............. TATGGTTAATCCTCCTTTATGCAGGCGAATTAT 255062 32 87.5 32 T.........A.G........G.......... TTGTTCCTGGACATCTCTCTATGTGCATTAGA 255126 32 93.8 33 G....C.......................... CCGATTGCTCCTATCCCTACAACATATTGAAGA C,G [255136,255144] 255194 32 90.6 34 A....................G..A....... TTAGGCACGTCCAGTTTTGGCGGATGTCCCTTCT 255261 32 93.8 35 ...................T.G.......... TCCCCGCATCGTTTCCCTTACGGGAGAAGCGAATT 255328 32 93.8 36 G.....T......................... GCTATGGCCTCGACGGTTACTCCCGGATGGGTAGAA C,G [255332,255342] 255398 32 78.1 0 A......T..A.G...........A....G.C | C [255402] ========== ====== ====== ====== ================================ ============================================================================================================================== ================== 35 32 88.4 35 CGTCGACCCCTCACGGGTGCGTGAGTTGAAAT # Left flank : TTCCTTATGGCCTCTTTATCTGTACCGGCAGTGTTTCTCCCACCCTGGCTCAGAAGTACACCGGCTTCTCTGAGGAGGACCTGAACCTGCTGTGGGATGCCATCATGAATATGTTTGACTTCGACAAGTCGGCCTGCCGGGCTGAAATGGCCACCCGCAAGTTGGTCATTTTCAAACACGAAAGCAAGTACGGCAACGCGCCCTCCCACAAGCTGTATGAGAGAGTTCATGTGGAGGAAGTCAACCCCGGGAAACCCATTCGCAACTACAGCGACTATAAGGTAACGGTGGATGATATCGACCTGCCTGCCGGTGTCTCTATCGAGGTCCGCGAGTAATATCCGGTTTGGGGTGCGAACAAGCAACACACAGGGATGACTGTGGGGGTTCGCACCCCAATTTATATTAAAAAATTGCTTTTTTTGATTTGCCGTATGGTATTACAAATAGGAACATCGCAATAGATGTTCTCAGCAGGAAAACAAATACAAAATCTTGCG # Right flank : CTGATTTGACGCCCCAACTTTGAAAATGGTACAATAATACTATCAAATAAGGAAGTATCTCAACTACTAAGCTACATATTTTCTCAGCAGACTCAAGGCAGTACACCGTCCCGGTGTACTGCCTTTTTATATATACACAAACCAAACTTCAAAGGAGTGTTTTAACGAATGAAAGAGAAACTGATGAAGAAGCTGGAGAATTACCAGCGTCTCGACGCCGCCTGTGACCTGGCCCTTGTGGTCCTGGTCATCTGCGGCATCACGGTCTGTGGAGGCTTGGAGCAGGGGATGATAACCATTCCCACCAGCCTGATGCTTCTTGCTGGCGTTGTGATTGCGGCAGCCATCGTCCTTCTGGTCAAGCGGATTTCCTGGACTCAGGAGACCACTCTGGCCAATCGGATTGCCCGCCGTGAACGCTGGGAGGCGTCCAGAGTCCTGGGGGGCATGACTGAAGACGAGCTCATCCTGGACTTTCACCGCTACTTCAGCGGGGAAAT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:-0.28, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGACCCCTCACGGGTGCGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.20,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [39-46] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //