Array 1 91258-92323 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDBB01000051.1 Escherichia coli strain C60 Contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91258 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 91319 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 91380 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 91441 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 91502 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 91563 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 91624 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 91685 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 91746 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 91807 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 91868 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 91929 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 91990 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 92051 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 92112 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 92173 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 92234 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 92295 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118026-119641 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDBB01000051.1 Escherichia coli strain C60 Contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118026 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 118087 29 100.0 32 ............................. TTGGCAACGCAACTAAAGACAAAAATGGCGAG 118148 29 100.0 32 ............................. GCGAGACGGTAACAGCGGATATTGTGCAGGCG 118209 29 100.0 32 ............................. TTACGCGCCTGGCTGGCGAACCGCTGGAACTG 118270 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 118332 29 93.1 32 .........A..T................ CAAATATATTTTGCGTTAATTATTCGAGGTAA 118393 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 118454 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 118515 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 118576 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 118637 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 118698 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 118759 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 118820 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 118881 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 118942 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 119003 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 119064 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 119125 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 119186 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 119247 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 119308 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 119369 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 119430 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 119491 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 119552 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 119613 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //