Array 1 5869-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGJ01000180.1 Xanthomonas oryzae pv. oryzae strain IXO414 contig_180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 5868 31 100.0 37 ............................... AGCAAGGTGAATAACAACTTTGCGGATGTGCAGAGCC 5800 31 100.0 35 ............................... CAGCACCATCACGAACAAGTCGCCCACGAAATCGA 5734 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 5670 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 5604 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 5539 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 5473 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 5406 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 5340 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 5275 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 5209 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 5144 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 5079 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 5014 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 4948 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 4883 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 4819 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 4754 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 4688 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 4621 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 4555 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 4490 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 4424 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 4358 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 4293 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 4229 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 4164 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 4099 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 4033 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 3967 31 100.0 35 ............................... CTGGAAGCTGGCCACCGATAAAGGCGTTGCCTTGT 3901 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 3835 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 3768 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 3701 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 3635 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 3568 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 3503 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 3438 31 100.0 33 ............................... TTCAGTCAGGTATTGGGCTAGCGGCTGTGTCAA 3374 31 100.0 34 ............................... TAAGGAGGCTTTATGCCAGATGAAAAAAAGCTGG 3309 31 100.0 36 ............................... AGCTGGAAGAAGCCTAGGAAGGGTGTAAAGCCAGGT 3242 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 3175 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 3109 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 3043 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 2976 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 2910 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 2844 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 2775 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 2708 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 2643 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 2576 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2510 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2445 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2379 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2314 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2251 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 2187 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 2123 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 2057 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 1992 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 1927 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 1862 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 1796 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 1731 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 1666 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1600 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 1535 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1468 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1402 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1333 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1267 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1203 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 1138 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 1073 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 1007 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 939 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 873 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 807 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 741 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 676 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 610 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 544 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 479 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 414 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 349 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 284 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 218 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 152 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 87 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 89 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //