Array 1 5659-5429 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AEPH01000014.1 Neisseria polysaccharea NS342 contig00014, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
      5658	    32	  96.9	    35	G...............................	CATCAGTTCACACAATTCTCGCCGTTCGTCATTGG	
      5591	    32	 100.0	    33	................................	AAGGCAGAAATTGATTTTGATTTCGTCACCAAC  	
      5526	    32	  96.9	    34	...............T................	CTACAAAACGGCAATCACGCGCCGCTACATCCAA 	
      5460	    32	  93.8	     0	......................A.A.......	|                                  	
==========	======	======	======	================================	===================================	==================
         4	    32	  96.9	    34	TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	                                   	       

# Left flank :   CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGTGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGATTGTTCTTTAACAATCAGGATATTTGTAAATGTGGGTATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGC
# Right flank :  GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATAGGGAATATCTTTGTTAAAAACGGGTTGATATTATCTACACATATTAATATAATGATAATTATTATTAATCAAATAGGGGAAAAGTAGAGATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCTTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGATCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCTACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCGACCCGCCGTTGGTGCGGCAATGCGGCTGTTGAGACGGAATATTGCAACTTCTGATAAGGATGGCAATGATTTTCCAAATAGC

# Questionable array : NO	 Score: 5.40
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.00,-3.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,4.91   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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