Array 1 3315142-3314808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050198.1 Escherichia coli strain RH-004-WU chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3315141 29 100.0 32 ............................. GTCATCACGATGAATCAAAATTTCGCCCGGCT 3315080 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG 3315019 29 96.6 32 ....................A........ ATTGTTATAATTATTTATTGAAATATCATTCC 3314958 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 3314897 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 3314836 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGACAGGTATGAGGATCATATCCCATATGTAGTCGCCATTCAGCGCTGCCGCCCCCGGGCGCACTGATTGCTGTTCCATCGACAAGACGCAATCTCTTTCCGCTTGTACAACCCGTAACTGCGGCGCGTACAGCAAGTGTTTGTGCGGCAAGTATGCCAAACCAGTCGGCGGCATTCCGCAGCCGCTTCAGGAGAGCCACGTCAGATAATGTTGCAACGTCATGGAGCTGAGCCCATGCAGTGACTTCACGTAATGACATCCCCCCGGGGCCGTAAGCCAGCCCCAGACGTAGCAGAGTTGCAGCATCACGAATTTCGCGGCGGCGGGTTAGAGCCCCGGCATTACGTGCCGAAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGGTTTTTCCCCACCGTTCAGG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3338928-3338410 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050198.1 Escherichia coli strain RH-004-WU chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3338927 29 100.0 33 ............................. GCTTATAGAAGCATTTGGCATCGGTCATCCTGT 3338865 29 100.0 32 ............................. TAGACAGAGTAATAAATAACGCAGACAAAAAC 3338804 29 100.0 32 ............................. AGTAGCCTGGAGGCGCTCGCGCGCCTCTTCAG 3338743 29 100.0 32 ............................. TTTTGTGATTCAGTAATCGTTTGAGTATGTAC 3338682 29 100.0 32 ............................. CGAATCCCAGCCTTGAAATTTTGGCTCATGGA 3338621 29 100.0 32 ............................. CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG 3338560 29 100.0 32 ............................. AGTGCCAGCGCCGCGCACGCCTGATCATATGT 3338499 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 3338438 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5602088-5604375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050198.1 Escherichia coli strain RH-004-WU chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5602088 29 100.0 32 ............................. TCTTCACGGTCATCATAAAGCCATGCCAGCCC 5602149 29 100.0 32 ............................. GGTATTTGATAGCGGTTATCGCGGAGAATGTC 5602210 29 100.0 32 ............................. CAAATACTTTTTACGCTATCGCGTAAACTTCC 5602271 29 96.6 32 ............................T GTATTGTAAACAGAAATATACCCACAAAGGGA 5602332 29 100.0 32 ............................. TGCTCACTGTCACTGCCCTGCGGAGCCGGTGC 5602393 29 100.0 32 ............................. GAAAAGTCACGATGTTTGGTATTTTTAAAAAG 5602454 29 100.0 32 ............................. GCACTTCCATTGCCACTTTTTGCCAGTCAGTG 5602515 29 100.0 32 ............................. CTCCCTTGTCTGGTGTGTGTTGATCGTGTGTC 5602576 29 100.0 32 ............................. GCAGTGAAGCGCCACGAGTAACCGGGCAACAC 5602637 29 100.0 32 ............................. GAAATTGTTGAGTTGTACGCCAGACTCAATGG 5602698 29 100.0 32 ............................. TCTATTTCAATAATGAATTAACTAATGAGCAA 5602759 29 100.0 32 ............................. TACAGCATGGCTGAACTGATGCAGTCATCTGA 5602820 29 100.0 32 ............................. TAACTGGATCCTCAATAGGTGGTGATGGTTGC 5602881 29 100.0 32 ............................. TGGCGCTAATTGTTCGCCAGCAGCGACTGAAA 5602942 29 100.0 32 ............................. GCATCGCATCAGGACCGGGCCTGAAAAGTACA 5603003 29 100.0 32 ............................. GGACCTTGCCAGTGCCGCACACGGTTCTATCT 5603064 29 96.6 33 ............................C GTCACAGTCCAGCATCAGACAGCAAGAAATATC 5603126 29 100.0 32 ............................. ACATGACATTGATGGAGGGCCAGCCGATTTTC 5603187 29 100.0 32 ............................. GGAACCGGAACGACCAGAGGGCGATGATTGGT 5603248 29 100.0 32 ............................. GAGAGCGGGGTAAGCGATGACCCCGGGTAGGC 5603309 29 100.0 32 ............................. GACAAATAAAAGAAGAGAGAGTTATGGCAGGA 5603370 29 100.0 33 ............................. CTGAAAGGCGGTCACTTCGCCCTGCTTGTAAAC 5603432 29 100.0 32 ............................. GCTCCGATCATCTTTTTCAGCATGTTTGTTAT 5603493 29 100.0 32 ............................. AGAACCGTCATCACCGGTAAAACGGTTCCGAT 5603554 29 100.0 32 ............................. CCAGATTGAACTGCTGTAGAGGACTCACGATA 5603615 29 100.0 32 ............................. TATTCTGTCGGGCTTTCAGAATAATATGGTAT 5603676 29 96.6 32 ............................A ATACTGCTATTGCCCTCACTCTGACTGTTTTT 5603737 29 100.0 32 ............................. CCATCCTGGTCAGCAATATCAAGACACAGGCA 5603798 29 100.0 32 ............................. CAGAGCCGGTGGTTTACATGTGGGATAGCGAA 5603859 29 100.0 32 ............................. CAGCCACAGGCGGGAACCCCACGAAAAATCGC 5603920 29 100.0 32 ............................. TCCGGGCAGTCAACCAGCACCACGAGCGCCCA 5603981 29 100.0 32 ............................. TGAGTGAATTAAAGTGTCGAATTAATGGCAAT 5604042 29 100.0 32 ............................. GTACTGATCGATGTTTTCCGGGAAGCTCAGCA 5604103 29 100.0 32 ............................. GCTGTGGTTGGGGTATTCAGTGCTGCGGCGAT 5604164 29 100.0 32 ............................. GAATCCGTCACCCCAGTAGCGGAACGTATCAA 5604225 29 100.0 32 ............................. ATATCCGGAGCCTTATAGTCAGGAGGCTTCTA 5604286 29 100.0 32 ............................. CAATGATGGGGTTATACCAATTACCAGAACCA 5604347 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACGACCCGCGCCAGATATGTTACCGCCAGCCATCCCTGAACCTGAAACGCTGGGTGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTGCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCTGCAAATCACCCAACTGGCAGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACTTGGGGAGAAAACAGACGTATTCCGGTAGATTTGGATGGGTTACGCTTGGTTTCGTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATCTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : TAAGCGTCGTCTGAGTACCGTCTGGTCCCGAATCCAGGATCCTGTAACTTGCAAAATGGCATCTGAATCGATCGCAGTTTGGCGGCGTTTTTCAAGGTAGTTGTCGCCTTTTGTAATAAAATTACGTTATGCAGCCTCTTTTTCTGGATTCAGGTAGACTTCTGATATGTAGTCCCAGTTACGTAGATGCTTTTCCCAACGTTCAGGATGCTGTTCGCGTGCTAGCTGGTATACTGCTTTTCTGGCCGCCAGTATTTTCATATCATTACCTTGATGACGCTCGGCTGGCGTGACGTATTTGATCCCGCTGTGCTTATGTTCAAAGTTGTACCAGTTTACAAAACGATTTACCCATACTCTGGCATCATTAATAGTGCGAAAACCGTTCTCAGGCCACCAGGGACAATATTTGAGAGTCCGGAACAAAGATTCTGAGTAAGGATTATCATTGCTGACTCTTGGCCGGGAATAAGAACTTAGCACACCAAGCGCATACATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //