Array 1 57522-54686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLP01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57521 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 57460 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 57399 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 57338 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 57277 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 57216 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 57155 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 57094 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 57033 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 56972 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 56911 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 56850 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 56789 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 56728 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 56667 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 56606 29 96.6 32 ............T................ TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 56545 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 56484 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 56423 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 56362 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 56301 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 56240 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 56179 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 56118 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 56057 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 55996 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 55935 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 55874 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 55813 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 55752 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 55691 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 55630 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 55569 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55508 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55447 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55386 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55325 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 55264 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 55203 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 55142 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 55081 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 55020 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 54959 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 54898 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 54837 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54776 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 54715 29 93.1 0 A...........T................ | A [54688] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75645-74029 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLP01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75644 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 75583 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 75522 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 75461 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 75400 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 75339 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 75278 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 75217 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 75156 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 75095 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 75034 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 74973 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 74912 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 74851 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 74789 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 74728 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 74667 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 74606 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 74545 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 74483 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 74422 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 74361 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 74300 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 74239 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 74178 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 74117 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 74056 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //