Array 1 563007-563522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLM01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain 239 NODE_2_length_799821_cov_14.394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 563007 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 563068 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 563129 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 563190 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 563251 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 563312 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 563373 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 563434 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 563495 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 579659-581459 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLM01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain 239 NODE_2_length_799821_cov_14.394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 579659 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 579720 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 579781 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 579842 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 579903 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 579964 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 580025 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 580087 29 96.6 32 ............................A TCCCAAACAGTGTCGCCGTAACGCTCGGTGAC 580148 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 580209 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 580270 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 580331 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 580392 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 580453 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 580514 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 580575 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 580636 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 580697 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 580758 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 580819 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 580880 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 580941 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 581002 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 581063 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 581124 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 581185 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 581246 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 581307 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 581368 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 581430 29 86.2 0 TAA.........T................ | A [581454] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //