Array 1 1854490-1856310 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040504.1 Neisseria sp. oral taxon 014 str. F0314 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1854490 36 80.6 30 ....A...A.GA.....TG........C........ CCGCCGGTAATGAGCGTGTCGTATACTACA C,A,C [1854492,1854499,1854507] 1854559 36 100.0 30 .................................... TCTCACAGCCTGCGCCTCTACGCCCGCGCC 1854625 36 100.0 30 .................................... GCCGGTCTGTTTGTATAACGAGTGCTTCAT 1854691 36 100.0 30 .................................... CCGTCAGCATCAAGTAATTGAAGTATAAAA 1854757 36 100.0 30 .................................... CAGCCTTGAGAGCAACTCGCAGGCCTAAGC 1854823 36 100.0 30 .................................... TTGGGTCGCTTCGTCGGCGTCAAGAACTTG 1854889 36 100.0 30 .................................... AACTCTTGACGCAGCCTGCAATACGCGGGA 1854955 36 100.0 30 .................................... CCTAAAGCCTTCCCCTCGTCTGTCAACGGA 1855021 36 97.2 30 ...........T........................ GGCGCGGCGGTAGGCTTTATGAGCGGACTG 1855087 36 100.0 30 .................................... ATTTTAATCACGACCAACTCCCCCTATCCT 1855153 36 100.0 30 .................................... TCCATCGGAATAAAGTCGCGCGCGACTTCA 1855219 36 100.0 30 .................................... AAAGCGATTTCTATAAGGAAGACAAAATGA 1855285 36 100.0 30 .................................... GATTGCTTTAGTCGTAGCACGAAATGCCAC 1855351 36 100.0 30 .................................... GCCTCCTCCTATCTTAAACGCCACAATCGA 1855417 36 100.0 30 .................................... GCCTCCTCCTATCTTAAACGCCACAATCGA 1855483 36 100.0 30 .................................... CTATCAATCCGCCGTCGAGCGGCTTGTTCA 1855549 36 100.0 30 .................................... TTACAGGGATAATTGAAGAAATCAAAGTTA 1855615 36 100.0 30 .................................... TCCCTTCGTCTGTCAGCGGAATACCACTGA 1855681 36 100.0 30 .................................... ACCGTCTGAATAAAGTTCAGCTCCATTTCA 1855747 36 100.0 30 .................................... GATTCCGTCGAGCAATTTGTTCAAACCAAC 1855813 36 100.0 30 .................................... AGAACAACGCGAAACGGCATGGCGAATTCT 1855879 36 100.0 30 .................................... TGCATACGTTGTCTTACCTGCCCCTGGCAA 1855945 36 100.0 30 .................................... TGGATGTGGCTAGCGTAGCCGAGTATGAGA 1856011 36 100.0 30 .................................... GACGTAGCAGGCAGTGCCGACGGGTGGCGG 1856077 36 100.0 30 .................................... ATTCGCGGACGGCTCAGAGATTAGAATTGA 1856143 36 100.0 30 .................................... GTTGTAAACCTCGCAGTTGTTTAATAACTC 1856209 36 100.0 30 .................................... CGGGAATTGCGGTTGATGAAAACTGTACCT 1856275 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCGCGCGCCGTGGGTGCGCGGGCTGACTTTCCTGCCGTTTATGGTGTCGCCCGTGTGCGTCGCCTTCGGCGTGCTGCTGCTTTACCCCGACTGGACGGCCTCGCTGCCCTTGCTGATCGCCACCTACGCGCTGCTTGCCTATCCGTTTGTCGCCAAAGACGTATCCGCCGCGTGGGACGCACTGCCGCCCGATTATGCCGATGCCGCCCGAAGCATGGGCGCCAGCCGTTTTCAGACGGCCTTATATGTTACCGCCCCGCTGCTGAAACCCGCCCTGCGCCGCGGCCTGACATTCGCCGCCGCCACCTGCGCGGGCGAATTTGCCGCCACACTGTTCCTGTCCCGCCCCGAATGGCAAACCCTGACAACCTTGATTTACCGCTATCTGGGCACGGCCGGCGCAGACAATTACGCACGGGCGATGGTACTGACGGCGGTGCTGATGGCAGTGGCACTGGCGATATTCCTGGTGCTGGACGCAGAAGAGGGGAGATAAGGCC # Right flank : TGCTTCAACGGGAAATCCTTATTCTGTAAGGATTCCACGCTTTCTTTTGTCTAAAAAACGGAGATTAGAACAGCAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTGAGTTCGCCTAAAAGCAGTTTCATGGCGGCAAACTGCTTTTCTGTTACTTCCAAACAGCGTATCGAGCCTTCTTGCGGTAGGTTGGCGCATAGTCTGTTGTGGTGTTTCTGCAACGCATCTCTACCTTTGACAATCCGGCTGTACACGGAAAGTTGCAGCATTTGATAGCCGTCTTTCAATAGGAAATGTCGGAATTGGTTGGCGGCTTTGCGTTTGGCGACGGTGGTAACTGGCAGGTCAAAAAAGACGATAATCCGCATAAACTTTGCCTCACTCATATTGATATTCTTTCAAAGGCAGGATTTCGGGCAGTTTCAGCAGTTTGGCGTTTTTGGCGGCGAGGCTTGGCTGGAATGAGGCAATCATTTTGTCTATGGCTGCCAGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 2 2005510-2002899 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040504.1 Neisseria sp. oral taxon 014 str. F0314 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2005509 28 100.0 32 ............................ CCACTCTCTAAGCGCGTCAGAGCTGATTGCAT 2005449 28 100.0 34 ............................ GGAACTTTCGTTCCTCTTGCTTAGCATCTAGCAA 2005387 28 100.0 32 ............................ TACCGAGCAAACAAGAATTTCAAACCTGAAAC 2005327 28 100.0 32 ............................ TAATGAATCGCTGTAAACGTTTGACAAATGAA 2005267 28 100.0 32 ............................ CAAGTAATCGAATTAAAAGAGTACAACTCTTA 2005207 28 100.0 32 ............................ ATTATCGTTGCTGCGTACACGGTGGACATATA 2005147 28 100.0 32 ............................ ATTTTTTGTAATCAAACAGTTATCGTGCAAGC 2005087 28 100.0 32 ............................ ACATCCGTTGTTTCAAAAAAACGCCCGCTGAT 2005027 28 100.0 32 ............................ TAGCTTTATAGCCGCTGTTTTTCCTGATGCTT 2004967 28 100.0 32 ............................ AGTCCACCTGCCAAGAGTTGTCGCTTTGTTTC 2004907 28 100.0 32 ............................ AAACATTCCGATAGGCGTCAAAGTCAATGCGT 2004847 28 100.0 33 ............................ CATCCCTACTATTCGTAAAGCAGGGTCAGAAAT 2004786 28 100.0 32 ............................ TTTTGGCAGATGACAGCGAAGTACCGGTCATT 2004726 28 100.0 32 ............................ ACGCTGGTGGAAGCGATGAAAGATGGGAACTG 2004666 28 100.0 32 ............................ TTTTTTTAATAGAGTTTCTGATAAAGTGAATG 2004606 28 100.0 32 ............................ TGCTCTGTCTGTTGCTCATAATCAAAAAGATT 2004546 28 100.0 32 ............................ GTTTTCTGCATGTCATGCTGCTTATTCGCTTC 2004486 28 100.0 32 ............................ GAGATTGAGAAAATCGCGCTGGCGAAAGACGG 2004426 28 100.0 32 ............................ GCGCGCAGGCCGACAAGAATGCCGAGGCTGCG 2004366 28 100.0 32 ............................ ATCTTGAAAGAAAGGTTGTTGGTACAAGATGT 2004306 28 100.0 32 ............................ TATTTATGATGAAGTTCGTAAAGTCGAAGTAA 2004246 28 100.0 32 ............................ CCCATCTTTTTTGTTAAATAGGAGTTTTAAAA 2004186 28 100.0 32 ............................ TTCAAAATACCATTTTCAGAAACAAAATGAGA 2004126 28 100.0 32 ............................ AAAAGGGCGGAGCAACGAAAACCACAGTTTCC 2004066 28 100.0 32 ............................ AAGATGATGGCACATCATTCGTAAATACACTT 2004006 28 100.0 32 ............................ TGTTATTTTTATTTTGATGTTGTATGTTGGTT 2003946 28 100.0 32 ............................ TATCTCATACTCTGTCCCCACCCGGATTTCAT 2003886 28 100.0 32 ............................ GCCGACGAATGTATGCGTATGCCCGGGCCAGT 2003826 28 100.0 32 ............................ GATAAAGAAACATCAGAAGCAGATTTTTCTAA 2003766 28 100.0 32 ............................ TATATATGATGAGGTTCGAAAAGTTGAAGTCA 2003706 28 100.0 32 ............................ TCCTTATATTCAGACTTTAAAGGAACTTCGGC 2003646 28 100.0 32 ............................ ATCGGCGCGATTCCGCGCGTATGCGAGACCGA 2003586 28 100.0 32 ............................ TTTTCAAGCTGTGCCTTCAAAAGCCGTTTTGC 2003526 28 100.0 32 ............................ TGTTTGTAGCAACATTGACCCGTCCTTTATGC 2003466 28 100.0 32 ............................ ATAATCTGAAACTTGCCGATGGAGATTGACTT 2003406 28 100.0 32 ............................ TGATTTCACCCCTCATTGCAAAGTCGTGAAAC 2003346 28 100.0 32 ............................ CGAATTCCAAAATCCGCCGATTGATTTATACC 2003286 28 100.0 32 ............................ TATGTGTATCCGACCATAGGCGCGAACGGCGC 2003226 28 100.0 32 ............................ GCCTGCTGCTGCTTCGACTCGGCGCGGTCGGC 2003166 28 100.0 32 ............................ AAGACCGTGGCGGCAAACGCAAAAGTGATGCC 2003106 28 100.0 32 ............................ GATGCAGCAGCGATAATCTGCGGACAAGCTGC 2003046 28 92.9 32 .......A..A................. TTTTTATAGTAATGTAAACATTGATAACTATA 2002986 28 96.4 32 ....................T....... ATGATGTGCAGCGGGAAAGCCGAGTCGTAATC T [2002963] 2002925 27 71.4 0 ..........T....AC...-.CG..GC | ========== ====== ====== ====== ============================ ================================== ================== 44 28 99.1 32 GTTACCTGCCGAATAGGCAGCTTAGAAA # Left flank : ACGACCTGCACTGCCTGCTGCAAAACACCGGCCTGTCCGATTACGCCCTAATCGGCCGCATAGAGGAAGTGCCGTCTGAAAAAGTGTACGCCCACGCCCGCTTCGTCCGCCGCCAGCCCAAACACGGCAGCGACCTCAGGCGCGCCGAAAAACGCATGGCGGCGCAAGACCTCCCGCCCGAAGAAATCCGGCGGCGGCTGGCCGCCAAAGCCGCCAAACGCAGCGCCTGCACCCTGCCGCATATCTTTTTGAACAGCAAATCCACCCGCCAACGCTACCTGCTGGCCGTGGACAAAAAAATCGCCGCCCGAACCGAAGGCACGTTCAACAGCCACGGCCTCAGCCTCGGCGCAAGCGTACCACTGTTCTGACCCTTTTTTTCAGACGGCCTCAGAAAGCCCGTATCACCAAGCTTCCCGCAGGCCGTCTGAAAAAGGGTAAAAACCGAAAATACCGGATAACGGTTTATTTTTATACGGGATTTCTTTGGTTTTATTGTA # Right flank : TTTGGCTTTAGCCGAAACGGTTTTTCAGACGGCCTTGCGGGATTTGTGATGTGAGGGCGGGCGGTTAAGGTGTCTTCGCCGTTAATCTGTGAACGTTTTGTGGTAAAGTTACATTTCCGATATGTTGAGGCCGTCTGAAAACGGGGCGGTCAGGATTGGATGGGCGGATTACGATGAATTTCTTTCGGAAAACCTTGTGGGGTATCGCGGCGTTGTCGGTTTTGACTGCCTGCGGTTCGTTTGTTTCGCAATATGTGCTGGGGATGAATCCCTGCGTTTTGTGTATTTTGCAGCGGCTGTCGGTATTGGCGGTCGGGCTGGCGGCGTTGTCGGCGGCTTTTTTCAGGCAGTCTTCCGGACTCGGGCGGACGGTTTGCGCACTGGCGGTCAGTATTCCGGCCGTATACGGGGCGGGGGTGGCGGTTTATCAGCGCTATATCCAGAGCCTGCCGCCGGGTACGGCGCCCGAATGTGGCGCGCCGTGGACGTTTCGTCTGAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCCCTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2011363-2010313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040504.1 Neisseria sp. oral taxon 014 str. F0314 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2011362 28 100.0 32 ............................ AGTTTCATTTTAGTTTAAGAACCGGAACTTTC 2011302 28 100.0 32 ............................ TTGTTCAAAAATCCGAACGCCGCGCTTGGCAG 2011242 28 100.0 32 ............................ GTGAACGTTCTACCGCTTTTTGCTATAAAGCC 2011182 28 100.0 32 ............................ AAGTTGATAAACTGAACTGAAGTCCAAATCGC 2011122 28 100.0 32 ............................ TGCCAACACCGATAACTACAATGATAAATTGC 2011062 28 100.0 32 ............................ GTTGATAGGCGGCGCATTTCTCTAGGCATTCT 2011002 28 100.0 32 ............................ AACAGGCGCTGCGGTGCGGGCCAAGCACATAA 2010942 28 100.0 32 ............................ TGATTGACGTTGAGTTTAAGGAAATTAAATGA 2010882 28 100.0 32 ............................ ACTTTAACGCTGACATGATGGGGATGCAGCAA 2010822 28 100.0 32 ............................ TCCGTCCTGCCACAAATGTGCCTGGAGGGTAT 2010762 28 100.0 32 ............................ ATACGATAAAGTTTTGCATTGTGTTGCTCCTT 2010702 28 100.0 32 ............................ ATCAATCCCGAAAATCGGCGTGGAATCCAAAT 2010642 28 100.0 32 ............................ GCCTGAAAGCGGCCGAAGACGGCGCGGTAGAA 2010582 28 100.0 32 ............................ GTCCAAGCCTCGCAAATCCAGTTTCACTTTCA 2010522 28 100.0 32 ............................ TTATTACTATCCGTGAAATATCCTAATTTATG 2010462 28 100.0 32 ............................ TGTTTTTTACCGTGCGAGTAGTTGTGTATGCC 2010402 28 100.0 33 ............................ CATCCGGTACGCTCCCAAATCTCTTTATCTGAC 2010341 28 89.3 0 ........................TTC. | C [2010316] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTACCTGCCGCACAGGCAGCTTAGAAA # Left flank : CAAAATCAGCCCGTTCCGCTCCGGCCGCCCCCAAACCGACTACGTCGCCTTCTGGGACGCCGAAGACGAAAAAATCGCCTTCAAAACCAGTGAAAACGCCGAGCACTACGGCGGCAGCAAAGACGGCCGGGATACCGAAGTAGATTTCAAGCTCACCGCCGCCCCCAGCCCCACCGCAGCCGTTTTCCCGTGGCTTTGCCAAAGCCTGCCCGACGCCCTTGCCAAAGAAGCAGACGGCGACACCCCCGAAGCCCTCGCCGCCGCCGCGCAAAAATACGCCGTCGTCAGCCTCAATATAGACAGTGAAAAATGGTGCTACAACGAATGGAGCGGCTTCTGGCATGACACCGAACAAACCTAGGCCGTCTGAAACCCTTTTTTCAGACGGCCTGCAAACCGCACGTTTTATCAGGCCCGCAGCAATGGCTGCAAAAAAAGGTTTTCTGATACAATGCCGCGCAGGGTTTTCATTTTTCTGAAGAAAACCGGAAACTCGGTTA # Right flank : TCCCTTTCTTAAACCTGCCCGCCGTCATTCCCGCGCAGGCGGGAATCCAGATCTGCCCGCACAGAAACCTGTCGGGGAAAAAGGTTTCCTAAATTCCACGTTCTGGATTCCCGCCTGCGCGGGAATGACGAAACGGTGCGGCTGCGTACCGGTATGCTTCAAATCCGTTGATATTCCTTTTGTTTCAAGTGTTGAGGCCGTCTGAAAGTATTTTCAGACGGCCTTCAGCTACCGACCAACAATCATAAACACCATATCAATACTTTTTTGATGTTACAATGCATAGTCCTGCCGCACAGGCAGCTTAGAAATAGTTCGTCATAATTTTTTCATTAAATACCTGCCGCACAGGCAGCACTGATTTGAGTTTGAGACTTTTCAAGGAGTCTCAAAAGCTATAACAACTTCCTAGTTAGTCTTAATTTTATTATTTTATTGACGGACATCTTCCCTTAATTATAAAATAGTCCCAATGAAACATTTTTTCAAAGAGGAAAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTACCTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //