Array 1 21103-21285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPE010000095.1 Microcoleus sp. FACHB-45 contig95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 21103 37 97.3 36 ..G.................................. CCAGCAGTCAGCACCCTAACTAAGAACTTCCGCCGT 21176 37 100.0 36 ..................................... CTTGCCTCTTTCATTGACAAAAAATACGGACGGAAA 21249 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 99.1 36 GCCGGAAACAACCTAAAACCCTATCAGGGATTGAAAC # Left flank : TGCACCCCGTACAACTCCTCCCCGGCGCTATCTCTGAAATCCTCGCTTCTGTAACCGATACAGGCGTTTTGACTCTGGCGGATCGCTACGGTTTGATGGCCGCCACCTTCGACGACTCTCTGAATGACGAAGACAGAGGCTGTATCAACCGCTTGCTGCGGGCGGTGCTCAGAGGCCGAGTGAAAGTAGTCAACGAACTTTCAGCAGCATTCTAATCGGGATTTGAAGTTTGGTTCTGAAGGCAAGGTGAGTCAGCGGTAGATGAAAATAGTGGAAACTCAGGCAGGAGTGGAAACAGCGGTAATTTGAATTCGATTTAAAAGTTTTCTCCTCTAACTCAACAACGGTTTTTTTGTCAAAGCAGCCTTTACCGGCTGCTTTTTTTTATTTAATCGCGGATTTCCAGGTTGTACTGGCGGCAGAGGTCGATCAGTTCTTGTTGGAAGCGATCGCGCACATTGAAACTTGTGTTTTAACCACGTCTAAAGCTTCAATTTTGG # Right flank : CTTTCCGAAGTATTCACCAGAGGAGGAGACAGGAGGAAAGAGGGTATTCTTCTCCTGACTCCTGACTCCTGACTCCTTCACAAGCCGGAAACAAGTTTACTTCCAACACTTGTCACAGCACAGGTAGTGGTCATAGATAATCTCACATTTGATAAAAGTGGTCGGATTCAGGAATTGATTCAAACTGCAGGGTGTAGACTATTATATTTACCGCCATACTCTCCAGAGTTTAACAAAATTGAACAAAGAAGAGTCTTGGCTAAAAAGTCAAATTCGCAAACAGCTTGATGAGTTTGATTGCTTACGTTTTGGCCACCCTTGGATGTCTTGCGCCTTGCATCCTAACATGAGCGGTTGCTATATGTGATTTCCCCGATTATTCAGTTGAGAAAACCTCAAAATTATGACCAATCAAACAACTTCTCCACTCCTACTCAGCCCCTTCAAAATCGGAGATTTATCCTTAAAAAATCGGGTAGTCATGGCACCCCTAACGAGAG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAACAACCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 30297-29993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPE010000114.1 Microcoleus sp. FACHB-45 contig114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 30296 37 100.0 34 ..................................... AATTTTGGGGGGTGTAGGAACAGTTTCTATATAG 30225 37 100.0 37 ..................................... TTCACAACTACACTCATCATCAATTTTATCAAGCTCC 30151 37 81.1 34 ...............TTT...GC...A..C....... CCTTTATTGGAAGGCTTTCGCCTCGGACAATGTA T [30126] 30079 37 91.9 13 ..G.......T......T................... AAAGTACAAGCGC 30029 37 81.1 0 ..T.C.....A.C....T........AA......... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 90.8 30 GCCGGAAAAACCATAAAACCCTATCAGGGATTGAAAC # Left flank : GCAAAAATTGCTTTAACTCTTTTCGCTACTACGGTCAGCATTGTTGGTTTATCTTCTAGTGTCTTGTCTGAAGAAGTTAGTGTAGGCAAGAACAATACTTCAATAGTTTTTGAAATTGCTCAGTCTGCCGATGATTATCAGGCTGGCAGGAAAGACGGTTGGGCTAAGGGTTACAGTGATGCTAGGGAGGGTCGTGAATATAAGGATGGTTATGAAAATTCTGATTATGTAGATGGTGGTTACAATCAGGGTTACGTTGAGGGTTACGTTGAGGGTTACGGTGAGGGTTCAAATTAGAATTGCTTGAAGCTATGCCGTTGTTATGAAAAAAATCCCTAGCGAATCGCAAAAACTCTAGGGATTATTGAGTTGATTATCTAGGTCACCGGTCAACCAAAACAAAGAGACCCACATCGGCTCCCTGTGGGCTTTTGTGGGTCTTTAAGGTGTTTGGCTACCTTGGGGGTTTTGGTGCCCCAGGGTGTCACCGGGGAGTGAGT # Right flank : TAAATCGCGTATGATATCATTTGCGGTTGCACTCAGACATGACTGTTTACTGTGAGTCGAAAAACTGAAAATTGCGCTGATATTTGTTGCCAGCTTGAATCAACTTTACTAGGACGGACGATGAAGCGCGGATTTGAGATCGTGCCGGCGCACCCGGAATTGATATGAAGCAGCAAAATACAAATTAAGCCACCATAAACCTATAGCGGTTCTCAGGAAAGTAAGGTACTCTTCCTGTTTGGCCAATGCCCTGTTTGGCCAATGCCCTGTTTGGCCAATGCCCAAGAACACCTCATATTACTGAGAAAGGCTATAAATCCCCTCTTCACTTAAGATGACAATGACAATTCGGCTTTTCAATCAAAGACTCAACCAAAGCATTCAAAGCAACCGCCGCCAACAACCCGCCACCAAAAGTCCCCACAGTCGTAATATAAGCAACGCCCGATCGCACTAACCGCCGTTTCGCCACCGGAGAATGACTAAAACCGATCGGCATT # Questionable array : NO Score: 8.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.54, 5:0, 6:0.25, 7:-0.49, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAAACCATAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 31523-31330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPE010000114.1 Microcoleus sp. FACHB-45 contig114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 31522 37 100.0 39 ..................................... ACTTGAGACATTCCATCAAACGACATCTCTGCGGCTCTA 31446 37 100.0 43 ..................................... CATGTGGATATTTTAGGCGATGGTTAGCTTTGTGTTGAGCCGG 31366 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 100.0 42 GCCGGAAAAACCATAAAACCCTATCAGGGATTGAAAC # Left flank : CGGGCTTGAAGGGTGGGACTTTGGGGGCGATTTGGGGCAGTTTTTTGGGGACTTTTGCGGGTGCTGTGTTGGGGGCGTTGGTGTCTGCGATGTTTCCGGCTGTTAGCGCTGGGGTGCCGGTGCAGTTGGGGCCTGTGGCGGGGGCGATCGTGGGGGCTGGTTTGGGGGCGATTTGGGGCGTGGTTTCGGGTACTGTTTGGGGGGCTTTGGGTAAGTGGTGATCGGGTTGATGTCTGTTTTTGGGTTGAAAATGCGTCTATGAGTAGGTGTAAAAATCGAGGTGTTAAATTGGGGGGCTAGAATGTACGTGCTGCAAGGGTTTGAGGCTCTCTGTCTAAAAATACGATTCACGGAAAGTCTGAAAGTATTACAGGATAAGGCTTTGGAGTGAATATGAAAAATTGGGTATTGACAAGTCGAAGGCCCAAATGGTACTTTTGTTTGAGATTCACGGAACTGCACCTTGAAAACTAAATACAGCAAGGCTTCTAGAACGGGCT # Right flank : GTCCAAGCAAACTGAACCCAGCCATAAAAGAAAAGCTACTTTCGGGGTATGAGTAGCAACGGAACAGAAACTCCCGTTAAAGCTGTAATGCTTATCTGATAAGCATTTTAGAAACTGCTTGTTAGTCTCAATGAGACGTACCAATTAAACTTTAGGCTATTTGGTACAGAGATCTTGAACGGAATAGCAAGGGTTTCAGGCTCCTAGTTCTCAGCAGGTTCAACTGGTACACCTCTTAGCGGTGTTTTCTGTTCCGTTGCTACTCATACCCCGTTCTGCTAGAACTACCTTTACCCCTATAAGTGCTTTTACTCCAATGTCAAGATTGTTACTGACTTCTTCTGTAATTCTTTATACATATATATTTTTTTCATAAATATACTTAGAAGCTATTTACATACTGAAATAGCTATGACAGGATAAATTAGTACAGGAAACCAGCTTGATGGAGTATAATCCGAAACAAGATTAAGGTTTTTTCCAAAATCTCTGAACTTCCC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAAACCATAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 42153-39136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPE010000005.1 Microcoleus sp. FACHB-45 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 42152 37 100.0 34 ..................................... ATAGAAAATACTTCAAGCGAGGCGGTTGAAGTGA 42081 37 100.0 35 ..................................... GAACCCGTTGATTCCCCCCCAGAAGATGTAACCGA 42009 37 100.0 37 ..................................... AAATAATCATCATCAAGAACATCAAACTTAGAACTAG 41935 37 100.0 35 ..................................... TAAGGCTATTCTAAATAGGCCCTAGGCGATGTTAG 41863 37 100.0 35 ..................................... TGAAAATTTAGGTACGTCGGTACAACCAATATTTA 41791 37 100.0 34 ..................................... TTCAACCGGGCATAATTCCAGAATTTGAAGGTGA 41720 37 100.0 39 ..................................... GAACTGACTGACCTCGACGCGCAGCGCTCCTTTAATCGA 41644 37 100.0 33 ..................................... GGATTCTAGCGGCGGCTCCTGGGCTTGAATTCC 41574 37 100.0 34 ..................................... CGTCACAGTCATCAAATCGGCAGAATGGCCTTGA 41503 37 100.0 34 ..................................... GCTGCTGCGGTCGGGTAGAAAAAAGAATCGGCCC 41432 37 100.0 36 ..................................... GAATGTAGAGGTTGGCGTCCTGGTTGGTCAAATAAG 41359 37 100.0 33 ..................................... CCGCATCTCCTCAATATCCTTCTCGCTGTAGAA 41289 37 100.0 36 ..................................... AAAAAAGAGGTAAAACTTACGAAAAAAGAACAGCGG 41216 37 100.0 35 ..................................... AAAAACACATGACAGCACTAGCAGACGGCGACATC 41144 37 100.0 35 ..................................... GGGGTAAGGTGCTTCCTGATAAGAGGGCAAGTAAA 41072 37 100.0 36 ..................................... TTAGCCAAAAGTGAGCCAAAACTGAGCCGCCACAGA 40999 37 100.0 36 ..................................... TATGAACTTCCGCAAGTGGGCGAAGCAGAACGTCAA 40926 37 100.0 34 ..................................... TCCGGCATTCTCGGCGGCGCGACGCAAGCCACGC 40855 37 100.0 36 ..................................... GGCGCAAAAGGCAAAATGCAAAGCGCTTTCCATAAT 40782 37 100.0 41 ..................................... TACGACTTGGAATTTGTGGAGCCGTCCGAGGCAGAACTAAA 40704 37 100.0 32 ..................................... ATAGATACTAGCATCTCCTAACATGATTGCGT 40635 37 100.0 38 ..................................... ACTTCATAGCAGCTCGAAATTTGGTCATCGTATACAGG 40560 37 100.0 33 ..................................... CCATTATCTCATAAAATCCCTGCGGCGCTTTGC 40490 37 100.0 36 ..................................... CCAGACCCAAGACAGCTCGAATTAGCATTCTAAACC 40417 37 100.0 36 ..................................... TCCGAAGAAGGCTTGCGGAAATTAGTTCGCGCTTGC 40344 37 100.0 38 ..................................... CCGACCGATGAAATGTTTTCCCCATCCCTATCTAAAAA 40269 37 100.0 40 ..................................... GTTGGTTTCTTGCCTAGTATAAAGTCGCATTCCATTCAAG 40192 37 100.0 35 ..................................... AAACAGCGGTTAGGGTGTATACAAAACAAGCTACC 40120 37 100.0 41 ..................................... GCCGATGGTGACAAAACCCGATTACTGCGGCGAGCCTGCTG 40042 37 100.0 33 ..................................... CGGTTCTCCTGTAAATTCGTCCATCCGATCGGC 39972 37 94.6 36 ...............C...............G..... CGATCGGTCAAATTCTGTGGCCCATTTCCCGCTGGA 39899 37 100.0 36 ..................................... AAAATTGCCGCCGTTTGAATTCTGAATATTAATAGC 39826 37 100.0 35 ..................................... AAGCGACCGGGCATTTGTGCCACGACTTGGAAAAC 39754 37 100.0 35 ..................................... GTAGATTCGCGGTTAATTGCCGAAAGACTAGGTAT 39682 37 97.3 35 ....G................................ TAATTTTTCCCATTCTTTCAATTCAATTCCATATA 39610 37 97.3 35 ....G................................ TATAGGGTGTACCGATTCAATCTGCACGACCTCGC 39538 37 97.3 34 ....G................................ TCAAGGAACTTAAGGAAATCGGCTACCAGCTCAA 39467 37 97.3 36 ....G................................ TTCAATCAGAGCATACAGGCAATTGTCAATAATTTG 39394 37 97.3 36 ....G................................ CGCCAATCATCGGAACTCTTGGGCGGTGCCTCTTGC 39321 37 97.3 36 ....G................................ GCAATTGTAAAACCTCCAGTTGCAAGAGCACTTCCG 39248 37 97.3 38 ....G................................ AGTTTGCGCCCACAGCAAACAAAACCCTAACAGTGCAA 39173 37 91.9 0 ....G................C.......C....... | T [39148] ========== ====== ====== ====== ===================================== ========================================= ================== 42 37 99.2 36 GCCGAAAAAAACCTAAAACCCTATCAGGGATTGAAAC # Left flank : TGAGGAGATTGATTCCGGCTAGGACTCAAATCTAAGTTACGATCGCCACGCCGAACCAAGTCATCGAACCAGTTGAGGAGATGGATGCAGGCTAGGATTCAAGTCTAAGTTACGATCGCCCTGCCGAACAAAGTCATCGAACCCAAGGAAGACTGTATTTTGTTTTTTCCGCTGTGCGCTTGCTGTCAGACTAAGATCGAAGGTATTGGTGGCGTAGAGCCCGTTGAGCGCACAATATTTTTTGCTGAGTTTGCGTCAAGGGGTAGGTGTTAAAATCCGAGTATCAAATTTTTCGGCTCAAACTCATGTGCAGCAAGAGTTTGATGCCCCTCGTGTGAAAAAAAGATTGACGGAAAGTCTGAAAGCTTTACAGGATAAGGTTTTGGAGGGAGTATGGAAACTAGGGTATTGACAAGCCGAAGGCTGGAATGGTACTTTTCTTTTAGATGGACGCAACTGCACCTTGAAAACCAAATACACCCTGGCTTCTGGAACGGGCG # Right flank : CTCCAAACTACAAAATTATTGGCTCAAAAATAGACCTCTCCTCTCTCTTTTTATCTCCTCCCATAACCTCAAGCAATCGATCGACTACACGCCTCCAAGTAAAATTTTCAGCCACAAAAGTCGGGCCCGCAACCCTAGCTTTCGCAGCGATTCCAGGCTGTTCGATCGCCCTGCACATCAAATCAATCAAATGTTCCCCCTCTGGAGCTAAGATAAATAAAGTTTCCCCGTTGATCGTCACATTCGTAAATTTACTTTCAATTTGCAGTGCAAAGTCCGATCGCGTAAAATCATCTGTAGGGCCGCCTGCAGTGCAAATAACCGGCAAACCGCAAGCTGCAGCTTCCAACACCGGCAGATTAAAACCTTCCGCCAAATAGGGAGAAACATAAGCATCGGCAGCTTGGTAAAACTCTGCTATTTGAGCAAAAGATAGCTGGCTACCCGTATAAATTAATCTCGGTAAAACCCTCGCTCTTTCCGCATCGTTGAGCACAACT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGAAAAAAACCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 9157-10565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPE010000067.1 Microcoleus sp. FACHB-45 contig67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 9157 36 100.0 43 .................................... TTCATCCGTCTCGTTCTTGCGAACTTCGTTAAATACTTGACCT 9236 36 100.0 46 .................................... GTATAAGAAGGATAGAGATAGAGGACTATTGAGTTATGATCATTAG 9318 36 100.0 42 .................................... CCTGGTTTATCTCCGGGGGAATAAGGGCAGTCGAGGAGTCCT 9396 36 100.0 40 .................................... TCGTAATATTTAGCAAGCTGCGCTCTACCGTTTTTACCTG 9472 36 100.0 37 .................................... ATGTCCTCTTTCGAGAACACAGATTCTTTTTTTTCTA 9545 36 100.0 39 .................................... ATGGCTAGGTTCAGTGTTGCCAATACGAAGATTGCCAGC 9620 36 100.0 41 .................................... GTTAATTTTTTGATTGCCGTATCTAATTCTTTAGCTCTTTT 9697 36 100.0 38 .................................... GTAGATAGCATCCACCGAATCTTCATGTAGTTATCGAA 9771 36 100.0 46 .................................... ATTGGAATGCGAGAGATCGCCTCCTTAGCGGATTCAGTTGCGGATT 9853 36 100.0 47 .................................... TGATGTTGCTCTTGTGCCATTGAGATGAGTTCAGCTTTCTCCAGCGC 9936 36 97.2 42 ..G................................. GGTGATGGCGAAATGATTTTTAATTCAAGATTGCCACTTACA 10014 36 100.0 42 .................................... ATAACAGACCTAACAAGCATAGATCCTTGTGCGTTTTTTGTA 10092 36 100.0 34 .................................... ATACTAGGAACGAGTAATTAGGGTCTAAGTCTAC 10162 36 100.0 34 .................................... GCTTCGACCCAAATCGTAGCGCCAGAACACCGGG 10232 36 100.0 42 .................................... AGTTCCTTCATTTGTACTTCTAGTTGAGCAACTACGGGGGAA 10310 36 100.0 41 .................................... TTTGGTACTGAATGCAAAACTCGGCTGTTAAAAGTTACAAC 10387 36 100.0 36 .................................... CAAAAAACTTTTGGTCGGCTGCACTTAACTGTCGAT 10459 36 100.0 35 .................................... AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG 10530 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 19 36 99.9 40 CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Left flank : ATCCCTATTCAACACAAAATAGAATTCGATAAAGTATGCCGCTTTATATCGTTGTCTACGATATCCGAGTTGACAAGCCCACGCAAAAAGTGCATGACTTCCTGAAAGGTTATGGCAAATGGGTGCAATATTCTACCTTTGAGTCTGTTTTGTCAACTGCCAGATTTACAGGACTGCGGCGACGGCTGCGAAAGTTAATCAACCTAGACGCAGCATCCGGTTTTATCCGGTGTCGCGCCATACTTTGGGACAGGTGGAGGTTTTGGGAGTGGGGGCACCGGTGACAAAAGCACCTGGGTCAGTGATTATTTAGCTAAGGTTGCGAGGCTGGTGGTAAATTAGCTCAAACGACCTTTTTCCTTCGTGAGCCTCGCAGCTTTACTGGGCAAGGGTTTCAAGGATTATTATGAGCGAACACAGGTGTGAGTTCCACAAAAAATATCTGAGCCTCGCAAAGGGCCTCTAGACACCTTGCCCTGTATTGGGTGTATCATAGAGGA # Right flank : CGCTAAAACAAAATTAGTGGAAGTCTTCTATTAATGCGACAGTTTAAGGGAAACCATAAATAGCTGTTGACAAAAGACTAGATTTCTAATAGTCTAGTTTTGGGGGGATGCCTTTAGGGGACGCCTCTACCGCATAGAATAACGTCTTTAAGGCATCGTCCTATCCCCCAGCCGAAGTGTTACGGCACTTACATTGTCACTGTCTAGCAACTTACATTGTCACTGCCTAGAAATAGGTAGCTAAGACAAATTTAGTCGAAGTCTCTATTAATGCGGAATCGAAGGAGGCTTCGACTCCACCCGACACCGCAAACAGAAATTAAAAAATCAGAGCCTTCTGTAGTGCCAAAAGCTCTAAATTTTTAAGCTCTGGAAAACTCCAAAGACAAACTTTTACAACTCAAATTTCTGCAATTAATCCTAGTTGCGAAGAATTAATAAGCACAAAAAAAAGCCCCATAATCGGGGCAAAATATAACTATTCTCAGTCGTTGGGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 5870-5608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPE010000069.1 Microcoleus sp. FACHB-45 contig69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 5869 35 100.0 42 ................................... GTTTGTTAACTCTGGGGTCAAGTTTGATAATCTGTGTTGGTG 5792 35 97.1 45 .......G........................... CTGACCTGCATCGGCGCAAGGGTCGCACCAAATTTGTTGGCCCAA 5712 35 97.1 35 ...............C................... CGCGCCGCCTGCACGACGAACTGCACATCACCCGC 5642 35 97.1 0 ................A.................. | ========== ====== ====== ====== =================================== ============================================= ================== 4 35 97.8 41 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAA # Left flank : AGACTCCTTGCGCTGTCTGGGGTGTAGAATGGAGGTGAAACTAATTGAATGGAATGTATGCGGAAGTTAGTTTTCTCAGATACAGAAATGTTTTATCGTGAGCTAAAGACAGCCTTGGAGCAAAGTGAGCAAGTTGAAGTTATTACAGACTACGAGCGATATTCAGACCTTCCAGAGAAGTTAAAAACCATTTTTGAGTTACACAAGAACAAATCCGGAGAGTGGGTAAATATAGCTACAGGCGCATTCATCCCTTATTCTGCTGGGGTTACTGCGCTTAACTACTCTGCCCTCTATATTTTTGCTCATGCAGCAGGTGGAGGTGCTCTTGGATTCATAGTTGGTGGTCCTGTTGGAGCAGCAGTTGGCGCTGGTATCGGAGCCTTAGTTGGAACTGTTGCTGTTGCGACATCAAGCGGAAGGCATCATGTAGATATAGAAATTGAGGCGAATGGTAAACTCCGGCTTAAGATTAGCCCAATCGATTGAACAACGCGACA # Right flank : CTTAAAAAAGCAGCCAAGGTTTCCATCTTGACTGCTTTCAATTTTCCCATTCACTAGAAAAATACATGACTTACACAGTCATACTAAAGAAACCGGGTTTTTTACCTAATATGTGGGTTCCCAGCAAGAATTTTCGTAAAAAAAACCCGTTTCTGACTTCCCCTGCATCCTAGACTAAACTAATTGAACAGACACTCCCTACAAAAGCAAATCCAACAGCAATACAAACCCTGTCAATATATACTTTTTTTTGACTTTTGCTACAAACATTAACCTAACTCCTGGCCGGGCACGGCAATGCCGTTTCCCTACGGATGAGAACCTCTAATTTCTATGTATCAATATTTTTCATAATTAGTATAATTTTTTCTCCTGTCAATCAAGCATCCCAGTCTCAGTCCAATATTCTTCAATAGACTTGAGCTAAAAAAGGGCGATTTATCAAACCATGTAAACAATAGATTGCGACTTCCGCGCCAATATCGAAGAAACCTGGTTTT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 66683-66428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPE010000072.1 Microcoleus sp. FACHB-45 contig72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 66682 37 97.3 37 .......C............................. AAGGGTTTTTCTGCTATCACTTCGATGATTTCGATGC 66608 37 100.0 35 ..................................... AGACCCGCAGGATTTGAATTGGTGATCGTATTGCT 66536 37 94.6 35 ...........C.....T................... ACCCTGACGAAGCCACAAGCATTAGCTTTACTTGT 66464 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 36 GCCGCAATCAAACTAAACCCCTATTAGGGATTGAAAC # Left flank : CGGTACGGACTCAACTAGAAGCGGATGCCAGCCGTTTTATTCACAATCCTGATAAGGTGCGATATGATGCCCAGAAAAAGACGCTTTATTTGAGCAAGATTTTTAAGTGGTACGGCGAGGATTTTGTAAAGGCGGCGGGTTCGGTGGCTGAGTATGTGGGCGGTTATTTGGGGCCGGAGGCGGCTGTGGGTGATGGATGGGCGATCGTTTTTTTGCCTTACGACTGGAATTTGAATCGGGTTGAGGGTTGAGATTTCCGGGAAGGGGTAGGTGTTTTTTTGGGGGTGGTTTTTTCGGTTGTATCGCTGGCTATGTAAGGATTTGAGCCACTTTCAGAAAAAAATAGGTTGGCGGAAACGCTGTAATGCTTGCTGTGATGGGTTTTGAGGGCTGTTGAAAATTTTGCCTCTTGACAGGTCGATCGTTGAAAGGGTACTTTTTAGATCGTTGCCGCAAGTGTAGCTTGAAAACTAAATAGAGTACGGCTTTTAGATATGCTA # Right flank : TAACATCAAAACCCAAAAAAGACTTTTGTGCAAGTTCAGCAGGTGTCCCAGCCTCCATCGACAATCGACTCACAAGTGACATATTAAAAACTATCACAGTTCAAATCCTCTGGAATATTAAAAATGATTTCAGATAAATTTCGGCGCGAGTTGCGAGAACAAGCCAAACTCTGGCAAGCAGAAGGACTCATCGACACTTCATTCTACCAACAACTTTCGGAACGCTACCAATTCAACACACTCGAAACCGCCTCCCGCAACCGATTCCTCAGCATTCTGATGAGTCTCGGCGGCATTCTCCTCGGTATAGGAGTCATCACCTTTGTAGCCGCAAACTGGCAAGTTTGGTCGCGCGAAGTGAGAGTAGCGCTGCTGCTAAGTCTTTTCGTAGCAGTCAATGCAGCAGGTTTCTATCTGTGGCGAATTCCCCCATCCCGAAGCCAAAACTCCCATCCCAATATGCCCGCAACAAAAGGGCGAAACAAACTCCTAGGTGAAGG # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATCAAACTAAACCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //