Array 1 116682-118116 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKJU01000027.1 Pseudoalteromonas amylolytica strain JW1 Pseudoalteromonas_sp_JW1_S33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116682 29 100.0 32 ............................. GCTAGCGTCTGATGAAAATGGGCTGTTGGCGT 116743 29 100.0 32 ............................. CAATTCCTCTGCTTTTTTGAAGCTGCTAGCAT 116804 29 100.0 33 ............................. CCACCAGCAGAAATTGAGCGAAAACTAGAAGCC 116866 29 100.0 32 ............................. CCAAGCACATGTAATGAATTGGCTTTTTTGGG 116927 29 100.0 32 ............................. AGTTAACTACACAGGCTTTGTGGTCTGAAATG 116988 29 100.0 32 ............................. TAATGTAAATATATATACATGCAACAGTAGAG 117049 29 96.6 32 ............................A GGTAGACTGGCACCAAGTGCTGTCATTAACGC 117110 29 100.0 32 ............................. CATATCGTGGAACATCAATGCTTGGCCCGAGG 117171 29 100.0 33 ............................. TCGGTCATAAAATGATTATACCTTTCATTTTGC 117233 29 100.0 33 ............................. TGTATTGTTGGGTTTGAGGCTTTGGCTCGTTGT 117295 29 100.0 32 ............................. GCCTGCTGATATTGGTGAGCCGTGCAAATTTA 117356 29 100.0 32 ............................. CTATTGATATCAGGTTTAAAAAGCAGATGCGC 117417 29 100.0 32 ............................. GTCTTGCGCTTTGTCAGTTATTTTATGTTTAC 117478 29 100.0 32 ............................. TTATCTAGTTACAGCGGGTATCGCGGCTGCTG 117539 29 100.0 32 ............................. ATTAGATAGTGTTGCAGCAAGTCGTTTGCAGA 117600 29 100.0 32 ............................. GGTTAAGCAGCTCAGCGCGCGAATATAACGCG 117661 29 100.0 32 ............................. TTTTTCTCAGCGACATAGCCAATTTACCAACA 117722 29 100.0 32 ............................. CCATACGAAATACCATCAATGGTTGATAGCGG 117783 29 100.0 32 ............................. TCTTGATTTGTTTTTGAGCCATCAGGCTTAGT 117844 29 100.0 32 ............................. TTTACATAAATTTGATAATCTGTACGTTCCAA 117905 29 100.0 32 ............................. TTCTAAGTTGCGCTTCAATATCCCTATACAAA 117966 29 100.0 32 ............................. ACTTGATAGAATTGGCGGATCAAAATCAGTGC 118027 29 100.0 32 ............................. GCAGCTGGTAATGATTAGCAAGTTCAACTTGT 118088 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGTACCCACGGGGCTAAACCG # Left flank : AATTCCCAAAGATACTCCCTTGTGCCTTTGATATTCTCAAAAGCATGACATTTAGCAAAGACGAACTGGCCCAGTTCGCGTTGCAAGTAAACGTGCAGGCTCAAACTAGCAAGCAAGTCAGCCAACAGTGGCTGTCACAAAATCAACAACGTTGGCAAAGTTGGCTTAACCACACCAGTTGCGATGCCTATCGAGATTGATCGGTTAGCTTAAATGTGTGAGCAGTTACATGTACGTTTTATATATTGCTCTATGAAAAGGACTTGTTATTGACTACATGTGGCAAACTTAAGGTAGTCTCTAAAAACTTTCTGATAGATAGCCATTATTGGTAGCTGCTATCTACTCAATATTATATGTTTATCACTATAGCTTTGTTCTTTGATAATTTGAAAATCGTGATTTTTAGCACTAAAGACTAGCACCATTTTGTACCCAAAATTTTCGGTGGATTTTAGATGGCATTTTTTATTTAACAAAAACAAGTATATACTTTTAGA # Right flank : GTTTCCAATGTAAACGGGATGCGTATAATATTAGAGTGTCTCCCGCATACGTGGGGTGAACTGCAATGACTCATAAAATTACCTTGGGAGCTCACATGCCGATTGTTAAAAATGATGATGGATTGTCCCCTGAAGCCTACTTACTCGGAGAATCAACGAGCACCGTTAAACATGAGCTGATCGACGGGCAAGTGTATGCAATGGCTGGGGCAAGTGCTAATCATGAGCGAATTTGTCAAAATATGGCGAGAAAGCTTGGCAATCACCTTGAAGATTCACCGTGTGAGCCGTTTGGTTCAGATATGAAAGTGCGTGTACGAGACAACTTTTATTACCCCGATGTACTGGTTGATTGTAATTTCGACGAATCTGAACCCTACTTTACAACGACCCCCGTGATTATCGTTGAAGTGATCTCACGCTCAACCCGAAAAATGGACGAAAAGGTTAAATTGCTTGAGTACATTAATATACCCACGTTAGAAGAATATGTTGTGATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128817-129823 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKJU01000027.1 Pseudoalteromonas amylolytica strain JW1 Pseudoalteromonas_sp_JW1_S33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128817 29 100.0 33 ............................. TACGACGGTAAATCGGTCACATCGGGTACCGCA 128879 29 100.0 32 ............................. CTTACAGTGAGAGACTTTCCCCCTTATCATCT 128940 29 100.0 32 ............................. TTGACTTATAAATAGAATATATTCTACCTAGA 129001 29 100.0 32 ............................. ACCTTATCAGTGATTGCTTTGTTACCAAAGTG 129062 29 100.0 32 ............................. AACACAATAATAAATGGCGTCTTAGCTAACAT 129123 29 100.0 32 ............................. AAGTAGCCGCAATCTACGGCATCGCATCAAAA 129184 29 100.0 32 ............................. TTAAAACGGCTTGCCTTTGCTGTTTCAAAACA 129245 29 100.0 33 ............................. CACTGAAAACAGCAAAGGGCTCAACAAGACCAT 129307 29 100.0 32 ............................. GCTGGACTGTGCTTTGGGCTAGGGAGATTTCT 129368 29 100.0 32 ............................. GCGCTGATCAGGAAGATATTAACGCCTTTCTG 129429 29 96.6 32 ......T...................... CTGAATATGATTAGATAAACAATGTATAGCAT 129490 29 100.0 32 ............................. CTTTTGCAGGGCCATTTCAAACGGGTCACCGT 129551 29 100.0 32 ............................. CTCTTTCTCTGGTTCTACATAGCGGATATCAT 129612 29 100.0 32 ............................. GTATTTCAGTTATCACTTATAACTATATGTTT 129673 29 100.0 32 ............................. TCACGTTGAGAATGCATCGGCATATAATCAAA 129734 29 100.0 32 ............................. CGCGTGACTGAAATCAATGTTATGCACAATTC 129795 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 GTGTTCCCCGTACCCACGGGGCTAAACCG # Left flank : GAACCTGAATCCATAGGTGATGAAGGCCATCGCAGTGGAGGTTCGTGATGAGTATGTGTGTAGTGGTAACCGAGGCTGTTCCGCCAAGACTTAGGGGACGGCTTGCTGTTTGGCTGCTCGAAATTAGAGCGGGTGTGTATGTTGGTGATGTCAGTCGCAGAATTAGAGAAATGATCTGGTTTCAAGTTAATGAATTGGCGGAAGATGGTAATGTGGTGATGGCTTGGTCAACCAATACCGAGTCAGGTTTTGATTTTATCACCTATGGTGAAAACGCCAGAATGCCAGTAGATTTCGAAGGATTGAGATTGGTGAAATATACACCTAGAGGTGATGAAAGCATTGAGTCGTGATTAGCTTTGCACGATTGATAATAGCTCTTTAACAATATAAAAGTTGGTATTTTTAAACTTGTAAAAATAGAGAAGTTTGTACCCAAAAATTTTGGTAGATTTTATAGGGGACTTTTTCTTTAATAAAAACAAGTGTATATTTTTAGA # Right flank : GTCTCGGCGCATTACTCCTAAAGCACATGGACCCTGAAACAAGTTCAGGGTGACGGGTTTTGGAGTTGAGTGACGGGTTGGGAATTGGATGAGGGGTTGGAAGTAGGGTAAAGGAATTCGATTCAGGAAAACCACTGCCATCCTGACGAAGGTCAGGATCTTGTGTCGGTTTTGTTGCAATGTGCACATGGACCCTGAAACAAGTTCAGGGTGACGGGGTTTGGAGTTGAGTGACGGGTTGGAAGTAGGGTAAAGGAATTCGATTCAGGAAAACCACTGCCATCCTGACGAAGGTCAGGATCTAGTGTCGGTCTTGTCGCCATGTGCACATGGACCCTGAAACAAGTTCAGGGTGACGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAAGGAATTCGATTCAGGAAAACCACTGCCATCCTGACGAAGGTCAGGATCTTGTGTCGGTTTTGTTGCAATGTGCACATGGACCCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //