Array 1 70825-72413 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDM01000009.1 Providencia rettgeri strain AFE220_S1 26_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 70825 28 100.0 32 ............................ TTTTTGAGCCTTACGCGCTTGCGGATGATCTT 70885 28 100.0 32 ............................ TAAATTTCGCTCCGTTGATTACTTATACAATT 70945 28 100.0 32 ............................ TGTGGAAAACGCCGGCTAAACATAAATAAGAT 71005 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 71066 28 100.0 32 ............................ GCCATGTTGGTGAGTATGAATAACCACACCAT 71126 28 100.0 32 ............................ TAAAGGGTGGTGGTCAGGCGACGACAACAAGT 71186 28 100.0 32 ............................ ATGCTTTACTACAAACTGGCTTGAAGCCTTGT 71246 28 100.0 32 ............................ GATATTTGCTCTGCATCATCCTGCTCGCTAAC 71306 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 71366 28 96.4 32 ............G............... TGAGTAAGCAAATCATCACGATAATCATAGAA 71426 28 96.4 32 ............G............... TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 71486 28 96.4 32 ............G............... GTAGGCATGTAAGCCGACATACATTTGCTTAA 71546 28 96.4 32 ............G............... AGTTCCGTCACATATTAAAGAAAGCAAATATA 71606 28 96.4 32 ............G............... TTTATAAAAATCAGATGTATACATTCTTGATG 71666 28 96.4 32 ............G............... TAATAAACGTACCGCGACGATGATCTTAGCGT 71726 28 100.0 32 ............................ ATCCTCAGAACTTGAGAAAAACACATTAACTA 71786 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 71846 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 71906 28 100.0 32 ............................ GTTATAGCGTACCGATGTGGTACCCCGACTAT 71966 28 100.0 32 ............................ ATACGCACTTGCAGTCTCGAAGTGATTACTAT 72026 28 100.0 32 ............................ GTCAATTTCATAGTTAAAAATATTTTTTCCGT 72086 28 100.0 32 ............................ CTACGGCAAAGATGAAGAGATGGAGCTGCAAG 72146 28 100.0 32 ............................ ATTGATATTGTAGGGACACAAAAAAAACTAGG 72206 28 100.0 32 ............................ ACATCCGGTGCCGGTAATAAACTTAAATCAAT 72266 28 100.0 32 ............................ TTGAATTTTCTTTCTCTGAAGCACTGATGCAA 72326 28 100.0 32 ............................ CTACCCACGCCACGCTATTTATGTGATTTAAC 72386 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 81051-82040 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDM01000009.1 Providencia rettgeri strain AFE220_S1 26_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81051 28 100.0 32 ............................ TGAGACTACCCCCGTAGTACATGACGGGGGTT 81111 28 100.0 32 ............................ AAGAAAAAAAGATGAAGTTAGAGAGATTAGCT 81171 28 100.0 32 ............................ AAAACAAAATCAGGGGTCCGGGATTATCAACT 81231 28 100.0 32 ............................ ACTGTGAGCACGAAGCAAGTTATAGATAGCCA 81291 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 81351 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 81411 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 81471 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 81531 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 81591 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 81651 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 81711 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 81771 28 100.0 33 ............................ ACATCATCGTTTACGATACTTGAATTTTTATTT 81832 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 81892 28 100.0 32 ............................ ATCTGATGCCTTTGGGGTTATCTTCAGAGTTA 81952 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 82012 28 89.3 0 ...T......A.........T....... | G [82038] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTCCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCGACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGAATAACCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACTCCTAGCATACTGATACCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //