Array 1 177299-178550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPUV010000004.1 Escherichia coli strain E67991 NODE_4_length_323632_cov_32.597425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177299 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 177360 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 177421 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 177482 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 177543 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 177604 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 177665 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 177726 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 177787 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 177848 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 177910 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 177971 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 178033 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 178094 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 178155 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 178216 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 178277 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 178338 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 178399 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 178460 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 178522 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204097-204979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPUV010000004.1 Escherichia coli strain E67991 NODE_4_length_323632_cov_32.597425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204097 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 204158 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 204219 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 204280 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 204341 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 204402 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 204463 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 204524 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 204585 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 204646 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 204707 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 204768 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 204829 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 204891 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 204952 28 72.4 0 ..A........C..T..-..T.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //