Array 1 182167-181940 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYBM01000081.1 Clostridium botulinum strain food_20 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 182166 31 100.0 35 ............................... TGGAATATTTAAACATATCTATACCTTCTTTTTTA 182100 31 100.0 33 ............................... ACGTCAACTACGTTTTTAGTACCAGGCTTTTCA 182036 31 100.0 35 ............................... TTGTGAATGTATAGGGAAAAATGACCAAATGTTAG 181970 31 83.9 0 T.......A.............C......GC | ========== ====== ====== ====== =============================== =================================== ================== 4 31 96.0 35 GGTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AGTATTCTTTACCATAAAAAGTTGAACAGTAACATAAGATGTATTTAAATTCTATTTGTATTTCGTCACCTTTATGCAACTGAATAGTTGAACAGTAACATAAGATGTATTTAAATAGTTTACTGTGAAAATGGATGTGAATTTTTATTAGAGTTGAACAGTAACATAAGATGTATTTAAATAGCATATCTTCACCTGTAATTTTTTTGAATTCATATAGTTGAACAGTAACATAAGATGTATTTAAGCAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTAT # Right flank : AGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTCCTTAGAGAATGGCATAGGGATTTTTATAAAACTAAACTATGAATTGTGATAATTTCTATGCAAATTATTAAATTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTTAGTATTTAAAGGGAATAGATAAAATAATTTTTGGTAGATATATAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAGATTTCGTAATATGAAAAAATCTCATATAGCCTTATTAGTGGTAATGTATATGGTATTAATGGGAAGCTTCCCTAGATTTACGGGATGGGCAACTATTTTTTCAGCAATTGCAGTGGGAGGTTATTTTTTAAAGAACAAAAAAGACTTAAAAGAACTAACTAGGAAGAAGAAAAACTTTATATTTACGGGTATAATAATT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 182712-182418 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYBM01000081.1 Clostridium botulinum strain food_20 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 182711 30 100.0 35 .............................. ATAATCTTTGCTTATAGTATTCTTTACCATAAAAA 182646 30 100.0 36 .............................. TCTATTTGTATTTCGTCACCTTTATGCAACTGAATA 182580 30 100.0 36 .............................. AGTTTACTGTGAAAATGGATGTGAATTTTTATTAGA 182514 30 100.0 37 .............................. AGCATATCTTCACCTGTAATTTTTTTGAATTCATATA 182447 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ATATTGCCTTTTGTCCAAGCGTTGAATAGTAACATGAGATGTATTTAAATTTTCGATAAACACTAGAATCTACAAACATAGAAAAGTTGAATAGTAACATGAGATGTATTTAAATTAGTTTCCTGTGTTAAATGCCATCTTTAGAATGCCTGTTGAATAATAACATGAGATGTATTTAAATCTTGCTCCCCATTGTTGTTCTGAATATCTTTCCCAAATTGAACATTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTGGAATATTTAAACATATCTATACCTTCTTTTTTAGGTTGAACCTTAACATAGGATGTATTTAAATACGTCAACTACGTTTTTAGTACCAGGCTTTTCAGGTTGAACCTTAACATAGGATGTATTTAAATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGTGTTGAACATTAACATAGGATGCATTTAAGCAGAGAACCCAAATCTACGATTT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 183453-182965 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYBM01000081.1 Clostridium botulinum strain food_20 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 183452 30 100.0 35 .............................. TGTGATAAATATCCACCTTTATTTATCCACTCTAA 183387 30 100.0 35 .............................. GTAAACTGATTAGGAGTTAACTGATCTATGAATTC 183322 30 100.0 36 .............................. AGCCTCTTCTCTTAATTTAGCATAGTGTGATGATGC 183256 30 100.0 35 .............................. GAAGCTAAGAAAAATATATTGCCTTTTGTCCAAGC 183191 30 100.0 35 .............................. TTTCGATAAACACTAGAATCTACAAACATAGAAAA 183126 30 100.0 36 .............................. TAGTTTCCTGTGTTAAATGCCATCTTTAGAATGCCT 183060 30 96.7 36 ........A..................... CTTGCTCCCCATTGTTGTTCTGAATATCTTTCCCAA 182994 30 83.3 0 A.....C.T...................GC | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 97.5 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : TAAAGGAGAAGATGTAGATGGGAAAAGGATTTAATTATAATTATGCTTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCAAACTTAATATTACTAAAAAGGGACTTAAATAAAGAAATAGATGAATGTGAAGATTTTATATGTATTATAAAGCTAATGAATAATAATGTATACGGAGAAGAAATATTAGGGAATAAAGCAATGACAATAGGAGAAGATTTAATATTATAAAAAAATGGAATCAATTTTTCCAACCAATTTTAATTTTAAAACCTATCTTAGGCATTAAAATATAAGGCTTAAGATAGGTTTTTATTATGACTTTATGAAAAGTGGGAATTGCCTGGAAAATTTTCTGTAAAAGCTTGTAAAATCAATACTTCTATGGTATTCTTGGTTTTAAGGAATGGCTATTTCCCTATG # Right flank : AGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATATAATCTTTGCTTATAGTATTCTTTACCATAAAAAGTTGAACAGTAACATAAGATGTATTTAAATTCTATTTGTATTTCGTCACCTTTATGCAACTGAATAGTTGAACAGTAACATAAGATGTATTTAAATAGTTTACTGTGAAAATGGATGTGAATTTTTATTAGAGTTGAACAGTAACATAAGATGTATTTAAATAGCATATCTTCACCTGTAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 10904-10675 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYBM01000083.1 Clostridium botulinum strain food_20 contig00065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 10903 30 100.0 36 .............................. CATTTTACTCTATCTTTGTAACTTTACCTGTTCTTA 10837 30 100.0 36 .............................. TGTTTAAACCGAACATGGCGAACATGTTTAAAGTTT 10771 30 100.0 36 .............................. TTGCACGTCCCATAAGGGTACTGATATCAAACTGTT 10705 29 83.3 0 ........C........T..A.-..A.... | AA [10696] ========== ====== ====== ====== ============================== ==================================== ================== 4 30 95.8 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : GGACCTGGGATAATCAAGGAAACGTTGAGGATGTTGCAACAGGAAGTGCAGCTGGACCATTAGGTGCATATTTATATAAGCATAATATTTTTAATGTAGGTCATGAGATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATATTAGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAATAATAAACGTAAAAAATCGCATTATTCAAGAAATTGAATTTGCGATTTTTTATTGCGCAATCCAAATATATTGTAAAGTTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTAGAGCGTTGACACATAAGGCTTATGGTAAGTTTTTATTTTATATTTGTAAAAAGCAAAACTACTTGGAAAAATTTCTTTAAAATCTTGTAAAATCAATGGTTGTATGATATCCTTGAAATTAAAGAATGGCTATTTTACTATG # Right flank : TAATATGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCAAAGTTTTAGAATAGAATATAATTAGTTAATTAAGTTTCTATTAACAAAAACAATAATACTTTTAAAATATAAATAGAATAATTGGTTATATTGATTAAAGGGTATATGTTATAATATAGATAAATTTGTATAAATAGGTGTATAAATGGAATTTTGGGGACTGATTGTAACAGTAGATGATAGATCTTGGCTGCAAAATAATGGGGATTTAGATTTATCTACGGGTAGATTAGAAGATAATTTGGAAAAGAAATATAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAGAGAGCATAGAGTTTAAGAATAGAAAACCAATGCATTACAACTATAAAGGTATAAAATTATTAGCAAATAAGGTAAGTATACAAGTGAAGGATAATGAAGAAGCACAGAAGGTGGCTTTCTTAGCAAGAGCAGTG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 18679-18452 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYBM01000083.1 Clostridium botulinum strain food_20 contig00065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 18678 30 100.0 35 .............................. AAGATTAACCCGAACTGAGTTCCCTCATATCCCGC 18613 30 100.0 36 .............................. AAAATTCTGTACTTGATAAGTTTCCTTTTGTGCTTA 18547 30 100.0 36 .............................. CCTCTTGTAATCATTTTAACTTTTAATCTAGTTTCT 18481 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CATAGGCAAATCCAATAGTTAAAAAAAGTTCTCCAGTTATATCAGAATGAGTAAGGGTATAGCGCCTTCCTAAAATAGGCTCCGTTGAGGTTACACCATTTTTAAATTCAACTGAAAGTTTATCAGTATTCAATTTGTTCATTTAATCCCTCCCCATACAATACGTTTTATACAATATTATATGATAGGATTTATGAATTTAGTATATTTATATATAAATCAATTTTAATTATAATATTTAACTTAAATCTTGTATCAGATCTTGTACTACCAATAATATATCAGCTAATAGTACAAATAAAATATTTTCATATTAATTGAATTTTTCCAGGCACAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGGTTTTTATTTTGTATTTATAAAAAAACAAAATCACTTGGGAAACTTTCTACGAAACCTTGTAAAATCAATGGGTTTATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTGTACATAATCTGAAATTAAAGCGAAGTAACCCTTGAAAATAAAAGTACTAACAATGTTCTTCAAAAATTGAATAATATGGAATATTATGTCATTAATGTTAACTAATACAAAATGGTGAAAAAACATGGCGTAAATTATATAAATAATTTTGCTTATTGCACGGTGTATTTTGATATAATATTTAACATAAATAATTTATAGGAGGTACGGTGATGAACCAAGGGCAAGAAAAATTTTTAGGCTTTATTTTAGAAAGAGTAGAAGAGGATAAGGCTGAGGAAGCAAAAGCATTACTTGCAGATAACTTTAAGAAACAGGCAGAGGGTAATTTCACACATGATGATATTACGCAATTTATTCCTAAAATGGCTATGTTGTTGAAACCAGATAAGATTGAAGAAGTACAAACAGTTATGAAGCAATTTGCAGAAAATTTTAGTCATTAATAAAAACAGATTTGAAAATTATCCAAGTTTACTTTTTTATATAAAATGATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 7384-6892 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYBM01000082.1 Clostridium botulinum strain food_20 contig00052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7383 30 100.0 36 .............................. ATTATTGTTTTCATTTTATATACCTCTTTCTATTGT 7317 30 100.0 36 .............................. CCATTAAAGTTAATATTAATGCTTTAATTCTTTTTT 7251 30 100.0 36 .............................. CAATTTTCTATTTTATGTATCAACTTTAGATTGCAA 7185 30 100.0 36 .............................. TTATCATCTATTGCTATGGATACTATACCGTATTTA 7119 30 96.7 35 .........................A.... TCACTTACATTAGGTCGTGTCTTTGCAATTATGAA 7054 30 86.7 37 G.......G...T..A.............. ACGTTTATGGCACTTCAAAACCTTTTTTCAATAAGGC 6987 30 90.0 36 ........G......AG............. TAATTTTCTTTCAAATATTCTTTAGATTTTTCTATT 6921 30 93.3 0 ......G.G..................... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 95.8 36 ATTGAACAATAACATGAGATGTATTTAAAT # Left flank : AGATCCCTTTGAAGCCTTCAATGATATACAAAATGATTTGGATGAAATAGATAACGAAAAGGTAACCAACTTTGTTAATGGCTTAATAAACGCTAGTATGTCCAATCCATTAATAAGATACTCTTTTATGTTTTTAGTATATATGACGCCTATTTTGAATTTATTATTATTGATTAAAGGAATAGTAAATTATTTCAACAGAGCAACAGGATAATATTTTTAATAAATACATAATAATAACTAATCATTCTTATTTAGGTATATAAGCAATTTTAACTTTAACCATAATAATTTCCATTTGTTTTCTAAGTATTAATTTAAGTTTTTCCAAGTGAATTCAATTTTAAAATCTGTTCTAGCTATTGACATTTAAGGCTTATAGCGGGTTTTTATTATGAATTTTTAAAAAAGCAAAATCACTTGGAAAAATTTCTACCAAGCCTTGTAAAATCAATAGTTATATGCTATTCTTGAAATTAGGGAAAGGCTATTTTACTATG # Right flank : TTAAATGAGTATGAAAAATTAAGTGTAATTTAACCACAACATATGATGTAAAATCATTATAAAGATTATAATCTTTATAATGATTTTTTATATTTTAAAAAATAATATATAATATTATAATTATATGGAAAATGTTGACTTGATATAAATAATGTAGTAATATAGAATAAAAATTTAGAATATTGTTAATATTCAATAAAAATACAAGTGAAGACTGGAGGTGAAATAATGAAAGTATATGAATTAACACTAAAAATATTTCTCCTTAAAAATTTAACAGTGGACAAGTCCTATGAAAAATTAACAGAATTAATTGACAAATCTCTATGTAAAGATGATGAATTATTGGTTTTACATAATGAAAATAAGTATAAATACTATACCTTTTCATTACCATATAAATTAGAAAAAGATAAAGTATATAAAGCTGGAAATATATATTCAGTAAAAATAAGAACTATTGATGAGAAAATATTAAAGAATTTCAAAACTCAGTTAGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 19125-19549 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYBM01000082.1 Clostridium botulinum strain food_20 contig00052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 19125 30 100.0 36 .............................. AATTCCTAGTGCTTCCATTTTCTCTGCTGAAGCCTC 19191 30 100.0 36 .............................. AAAAACTATAAGAGCTTTTGGAAGTCAAAATAAAGC 19257 30 100.0 37 .............................. ATAATGAACAGCAAATAATTATGATAAATGGAAATCA 19324 30 100.0 35 .............................. AAGGTTAAGGGCATGCTTATAGAAGTATGCTTTTG 19389 30 100.0 36 .............................. TAAATTAAAAAGGCTTTTCATAGCTTCACCACTCTC 19455 30 100.0 35 .............................. AAATATGCAATGGGGACACTTAATCGCCAGAATGG 19520 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 ATTTAAATACATCTTATGTTACTGTTCAAC # Left flank : TCAAACAACTATTTGGAATACTTAATGATTCTGCGAAATTAGCCATAATATCTGCTTCGATATATTTATTATAGACTCCTCCACCCGAACATATAATGTTATTAGCGTATCCCTTATTAAATAATTCAACTGCTTTTATAACTCTTTCTCTCATTATCGGAGAAGGCTTCCCGTCCTGTAATGCAGGAAAGCCTAAGATAATTATCACATCAAATCTATCCCTTTTCAATTTTGTTGCAGGGGACTTATAAAGCAAAAGAGGATATAGGTTGATTAATACAAGGATTATAATAATAAAAATAAAAGCACTTATTGCCATATACTTTAATAAAATAATAAGAATATTAGCATCCATTTCCTTTTATACTCCATTCATTGCGTATAATTTATTTATACATGTTTCGCACCGACTCAACCACTTATAATTTTATCATTTAATATAAATTAGCTCTACAAGTTTTATAAATAAAATAGGGTTTTAATACTATTTTTACCATATT # Right flank : CCATAGCAAAATAGCCATTCCTTATTTTTAAGAATAGCACATAGACATTGGTTTTACAAGGTTTTAAAGAAAATTTTCCAACCGATTATAATATTTTATAAATATATAAGAAAAGCCTACCTTGAGCCTTATATTTCAAGAGCTAAGATAGGTTTGTAAGCTAAAGTTGGTTGGAAAAATATTAGCGTATTCTATATAATTATTTGTTATTTTTATCCTAAAATAAACGTAGTATTCTAAACTAAAATGTTATTTACCATTTAATTCCTCTGTTTTTAGTATAGATAATTATGATATAATATCCAAGTTAGGATAGTAATTCCGTAGTGGATGGCTACGGGGGTTTTGAATATTTTATCCTCCTAGGATATTGGTGAGTCTTTCACTTATGAATAGGGGGTGGTATTGGATATGCTAGAATTAACCATAAAAAGTTTTGTTGTAATTTATATTGTTAAATTAATTTTAAAACATAATCTTTTTATTTCTAAACTAGTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTACTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 21211-20461 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYBM01000082.1 Clostridium botulinum strain food_20 contig00052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 21210 30 100.0 34 .............................. CAGGTTGTATTTCAAAATTTGTGGCTTTATGTTG 21146 30 100.0 38 .............................. GCTATGTCCATAAGCATATCATTATATTTACTAAAACT 21078 30 100.0 36 .............................. GCTGTTAATAAGTCTGGGGGATGCTCATCTGTTACT 21012 30 100.0 35 .............................. TTAAATGACTTCTCTAACATCTCTTTTTCGCAAAT 20947 30 100.0 34 .............................. GCTAAACCAAACCTATACTAAGATATCTTTTTTT 20883 30 100.0 36 .............................. TATTCCTCAAAAGCAACATTACATAATCCATCCCCA 20817 30 100.0 37 .............................. TCTTTTAATTTTTTATTTATATCTTTTATTTTCTTTA 20750 30 100.0 36 .............................. CTTAATTCTAAAATCGAAGCATTGAATTTTTCTTTA 20684 30 100.0 34 .............................. CCCTTTTCAACTTTATTTAATGGTGCCCATACTT 20620 30 100.0 37 .............................. CTTTCTCTCCTTTGTGTAATTAGAATCTTTTGTATGG 20553 30 100.0 33 .............................. GATGCTATTTGTAAGCGCAGTTAATACTTACTT 20490 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.2 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATTTACAAATTAAAATTATTTATGCAATGGGAAGAGAAAATGATTTTGGCCATTGATTGTTTGAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTGAGTCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGCTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //