Array 1 645182-647591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065477.1 Streptococcus thermophilus strain 4078 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 645182 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 645248 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 645314 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 645380 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 645446 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 645512 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 645578 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 645644 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 645710 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 645776 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 645841 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 645907 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 645973 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 646039 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 646105 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 646171 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 646237 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 646303 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 646369 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 646435 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 646501 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 646567 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 646633 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 646699 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 646765 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 646831 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 646897 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 646962 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 647028 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 647094 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 647160 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 647226 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 647292 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 647358 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 647424 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 647490 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 647556 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1370120-1368761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065477.1 Streptococcus thermophilus strain 4078 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1370119 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 1370053 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 1369987 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 1369921 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 1369855 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 1369789 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 1369723 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 1369656 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 1369590 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 1369524 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 1369458 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 1369392 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1369326 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1369260 36 100.0 30 .................................... CACTAGACCACGCAAACTATAAAATAAAAA 1369194 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1369128 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1369062 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 1368995 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 1368928 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 1368862 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1368796 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //