Array 1 693422-691704 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIO01000001.1 Listeria monocytogenes strain FSL L7-0625 NODE_1_length_884928_cov_20.674559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 693421 29 100.0 36 ............................. TCAAATCCACATCAGTAATAACGCGTGAAATTGGAT 693356 29 100.0 34 ............................. TCATTATCATTGATAAATGATTGTGCTTTACGGG 693293 29 100.0 35 ............................. TCGACTTTGAAGACCTTATTTTTCTTCGCTTCCTC 693229 29 100.0 37 ............................. TACATATCGCGCTCCTCTGCTGTTAACGCAAAGTTTG 693163 29 100.0 37 ............................. TCCGCCATCTGCATTGCTAATGTTACAGAAGTAGCAG 693097 29 100.0 35 ............................. TAATCTTCGCGCGGATAAACAACAACCGATTTCCC 693033 29 100.0 36 ............................. TTCAGAGTTGCTTTTTCGTCCCACACGTAACTACTA 692968 29 100.0 34 ............................. CCTCTTCAGCAGCCAATTTGGCTTTTATCTCCGC 692905 29 100.0 37 ............................. CTGGTAAGGCTGGTGAAGGTTTAACAACAGTATTCAA 692839 29 100.0 36 ............................. ATGAAAAGAACGCGTGAAAACATCTGTATCGGATAA 692774 29 100.0 35 ............................. TGGGTTTAATCTTACCCATCACAAAAAAAGCTACG 692710 29 100.0 36 ............................. GAAGAAGGGGTTATGGAAAAGGAACTAATTATAAAT 692645 29 100.0 36 ............................. GAGACTCAAAAGTTAGTGTTAAAACTAGCGGCTACT 692580 29 100.0 35 ............................. ACAAAATACTTTTCGCAGAATTTTATTGCATAATC 692516 29 100.0 35 ............................. CGCGAACGCTGCAAGTCTTCTTTTTGACGGACAAC 692452 29 100.0 35 ............................. TGTTCTATTCCCTTCCTTCAATACTAAAGCTTTTT 692388 29 100.0 35 ............................. ATACAATGATGTCGAGACTTGAAGAAGGCGGCAAA 692324 29 100.0 36 ............................. TTAAAAAGTAAATTTGACTTTATTTTAATCGATGTT 692259 29 100.0 37 ............................. AGACGAACAGCTAGAAGCATTGCAAGAAAGCGATGCT 692193 29 100.0 37 ............................. CAAGTAACAGGAAAAGGACAAGTATATCTATTAAATA 692127 29 100.0 35 ............................. AGTTCAATCTCGCAACTACTTACAAATTTTTGTAC 692063 29 100.0 37 ............................. ACGATTAAGATTCGCAAAAAGTGAAGTCGCGGATCTA 691997 29 100.0 36 ............................. AATGGTATATTTTGTCAACAGGTTTATCCTATTTAG 691932 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 691863 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCCGTTTTGA 691798 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 691733 29 93.1 0 .......................C....C | A [691708] ========== ====== ====== ====== ============================= ======================================== ================== 27 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAAAGCGG # Right flank : TTCCTCTTAAAATTTAAACCTCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 710810-710195 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIO01000001.1 Listeria monocytogenes strain FSL L7-0625 NODE_1_length_884928_cov_20.674559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 710809 29 100.0 38 ............................. GGAACAATTAGACACTACTATAGATAAGATTAGACAGC 710742 29 100.0 37 ............................. AACATTAGAATGACGATTGTTTCATAGGCTCGTTTCA 710676 29 100.0 37 ............................. GAAACAAGGAAGATGTTTATTGCACCAAAGGGGCAGT 710610 29 100.0 36 ............................. AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 710545 29 100.0 36 ............................. TTCTTAAATTCATCAATTTGTTTATCATACGGTTCA 710480 29 100.0 34 ............................. GCGTATTTCAATGACACCTCTTTATCAGCGCCTA 710417 29 96.6 35 ..............A.............. CTTATTATCGAAGCAGGTACAAAACTATTAACATC 710353 29 96.6 36 ...........C................. TGTTTTTCGCAACGTCGGTGCTTCGAGCCATCGAAT 710288 29 96.6 36 ..............A.............. GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 710223 29 79.3 0 T.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 96.9 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAAATAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //