Array 1 199683-198634 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQL01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium str. CDC_2009K1288 isolate 2009K-1288 SETK1288_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 199682 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 199621 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 199560 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 199499 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 199438 29 100.0 32 ............................. AGGATTATCTGTATTTTACGGAAGTGGGCGCG 199377 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 199316 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 199255 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 199194 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 199132 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 199029 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 198968 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 198907 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 198846 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 198785 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 198724 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 198663 29 96.6 0 A............................ | A [198636] ========== ====== ====== ====== ============================= ========================================================================== ================== 17 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17598-16222 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQL01000024.1 Salmonella enterica subsp. enterica serovar Typhimurium str. CDC_2009K1288 isolate 2009K-1288 SETK1288_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 17597 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAG 17536 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17475 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17414 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17353 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 17292 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17231 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17170 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17109 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17048 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 16987 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16926 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 16865 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 16804 29 100.0 34 ............................. GTGAGTTTCGGTTTTAATTTCGTCGCTAAGCTGC 16741 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16680 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16619 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16558 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16497 29 100.0 36 ............................. TTTTGATACGTAGAGTGCGAAGAGGCAGAACGGGCA 16432 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16371 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16310 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16249 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ==================================== ================== 23 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCTGTTTACGTTT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //