Array 1 163193-160662 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNL01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163192 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163131 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163070 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163009 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162948 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162887 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162826 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162765 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162704 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162643 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162582 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162521 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162460 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162399 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162338 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162277 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162216 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162155 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162094 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162033 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161972 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161911 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161850 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161789 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161728 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161667 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161606 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161545 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161484 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161423 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161362 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161301 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161240 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161179 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161118 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161057 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160996 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160935 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160874 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160813 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160752 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160691 29 93.1 0 A...........T................ | A [160664] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181315-179700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNL01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181314 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181253 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181192 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181131 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181070 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181009 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180948 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180887 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180826 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180765 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180704 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180643 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180582 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180521 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180460 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180399 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180338 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180277 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180216 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180154 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180093 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180032 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179971 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179910 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179849 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179788 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179727 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //