Array 1 96768-94786 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAEN01000024.1 Escherichia coli strain KCJK1551 NODE_5_length_324101_cov_11.0633_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96767 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 96706 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 96645 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 96584 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 96523 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 96462 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 96401 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 96339 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 96278 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 96217 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 96156 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 96095 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 96034 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 95973 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95912 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 95851 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95790 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95729 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95668 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95607 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95546 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95485 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95424 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95363 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 95302 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 95241 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95180 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95119 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95058 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 94997 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94936 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94875 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94814 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123246-122485 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAEN01000024.1 Escherichia coli strain KCJK1551 NODE_5_length_324101_cov_11.0633_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123245 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 123184 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 123123 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 123062 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 123001 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 122940 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 122879 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 122818 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 122757 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 122696 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 122635 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 122574 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 122513 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //