Array 1 197864-196132 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDJ01000005.1 Eisenbergiella tayi strain DSM 26961 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 197863 30 100.0 36 .............................. TTACTCAGCTGGTACCCATTGTATGCCGCTGTCACC 197797 30 100.0 35 .............................. AGTTATAATTTTATAACTACACCAATTGGTATTAT 197732 30 100.0 36 .............................. TACAATCTTATACTTGATGAAGGTCCTGGAAATACC 197666 30 100.0 34 .............................. AGAAAAAAACAGACCGTTTTTAGTCTGTTTTTAG 197602 30 96.7 35 ....G......................... CACCAACATTCATTTATAAAAACCTCCTTGAAAAC 197537 30 100.0 36 .............................. AGCTTTTTATACCCACTTCCCTGCAATCTGGTTTTC 197471 30 100.0 35 .............................. ACGGACTGTTCGGAACTTCTGGTGTGGTGGCCCTG 197406 30 100.0 35 .............................. GTCGAATATTCAGGTGCTTGTTACGGGAATAGCTG 197341 30 100.0 37 .............................. TATTTAGCGTCTATAACAAGGGCGGCCAGATTCCCTA 197274 30 100.0 36 .............................. AATGCCATGCCGGAGTTAAAGAGGCTTGATATTGCC 197208 30 100.0 35 .............................. TAATACACCGACACCAGGGATGCATGGGGGGATAA 197143 30 100.0 36 .............................. GTTCCGGTTCCGGACCATTTTCTATCTCATTGTCTG 197077 30 100.0 36 .............................. CTTATAGCCTGCCGTATAACCTCTATTCCATAATGT 197011 30 100.0 36 .............................. ATTTGTGCTTAATGGAAGGACAGGACAGGTAACGGC 196945 30 100.0 34 .............................. TGGCAGCAGGTAAATGTAAAGCGGCATATTATAC 196881 30 100.0 36 .............................. CCCTGACTGAGCATGACCAGACAAGCCTTGTTGGTC 196815 30 100.0 37 .............................. TTAAGGTAATACTCTATGTCTGTTGGCTCTACATTTC 196748 30 100.0 38 .............................. CGGTGACGAATGAGGAATTCCAGAAAGATTCCCGGAAA 196680 30 100.0 36 .............................. ATGAACAGGGAATATGTTGGGACGGCAGAGCTGAAT 196614 30 100.0 35 .............................. TGACGATTAATGGATGAGCTTGTAAGTTTGAGACT 196549 30 100.0 36 .............................. TGTGCCGGATCTGTATATTTGGCTTACACGCCAAAT 196483 30 100.0 34 .............................. GATGGAGCGAGAAATAGGATGCAAAGCCTTCCGG 196419 30 100.0 34 .............................. TTTCTAAAATGAACAAGATTTTGATTTCGCTTCT 196355 30 100.0 35 .............................. TCTCTGAAGTGTCATAAGTATCATAATTCCTATCA 196290 30 100.0 35 .............................. ATATTAAGTATCTGGCGGGCCAGGAACGGCCCGGA 196225 30 100.0 34 .............................. TTACTGTGGATAATATCATTCACACGAACACCCT 196161 30 73.3 0 ..A..............CT.G..G..CT.C | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 98.9 36 GTTTAATAGTAATATAAGATATTTTGAAAT # Left flank : CATTAAAGGAGAATATTTAATGAAAAAACAGCTTACATATAATTATGCGTTTGTCTTTTATGATGTAAATGAAAAGAGGGTTCAGAAGGTTTTTAAGATTTGTAAGAAATACTTATCTCATTTTCAATTTTCTGTTTTCAGAGGAGAAATAACGCCTTCCAAGCTTATTGAACTAAAAACAGAGCTGAATAAAATAATAAATAAAAATGAAGATTTTATATGTATAATAAAACTAATGAATGATAATGTTTTTGGTGAAGAGATATTAGGGAAAAGGGATGAGGTAACAGGAGAAGATTTGATTATTTGAAAAATGGTATATGAAATTTACCAGGTGTAAAATTGGAGTTTGTATGTGAGATGGTTGATTTTACTGGCATTGTAGGTGTTTTTGATATGTTGATGTTTGGGTGGAGGCGGACTTGGTAAAAAAGCTGGAATTGGTTGTATTGTGGGGATTTATTTAGTATAGTAAATAGGAGAAAGGGGGATTTGCGTTG # Right flank : TTTTAATTGAAAGACCTGTAAGTTGCTAAAAGCTCAAAAAGCCCCCTTGTTGTTTTATGACTGTCTTGATTCAGAAGATGAGCTGTTTTATTTTGCCTATTTCACAGTTCTCATCGAGCATGTAATTCAATGCCAGACATAGATTGTATGCCAGTACTTTGTTTACCAATCGGGTGCATAGTCCTTGAAAGCTTTTGGCGTGTACTCTTTCCGCATTTAGCTGCTAGCTTAGCTGGGAAAATACTGTCTCAACACGTCTGCGCAGTCGAAATATCAACTGTCGTACAGGTCTTGCCCAGTCCGTTTTACTGTTGGACCGCTTCAACGCCATCAGGCAGATACCCTGTTCCCTCATTTCCCCGCTAAGTGCTTCACCTACGTATCCTTTGTCTCCAAGAATCGTAAGGGGCTGCTGCTGCATCACCAGGTCTCTGAGTCCTTCTCTGTCATCCGTGGATGCCAGGGTGATTTCAAAAGCGGTTATAAAACCCTCCAAAGTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAGTAATATAAGATATTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 382519-380512 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDJ01000002.1 Eisenbergiella tayi strain DSM 26961 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 382518 32 100.0 35 ................................ TTGTCGATGTCGGTCAACTTCTCCGAATCAGTTTT 382451 32 100.0 34 ................................ GCGGTGTGGAATGTTGGCGGAACTGGTTATCAGC 382385 32 100.0 33 ................................ TTTTCTTGTCATAAAATTGCCTCCCTTATTGCC 382320 32 100.0 34 ................................ ACCAGTAATCACCATATCATAGGTTTTCTGTACG 382254 32 100.0 34 ................................ CGTAGGTTTGGAGAGTCCTTTAATCCAGTTGCTT 382188 32 100.0 34 ................................ CTTGGGATATCGGGGCTGTCGTAAGCTCCATGGC 382122 32 100.0 33 ................................ CATTTGTGGTGTAATAATTGTTAATCGTATTGG 382057 32 100.0 33 ................................ TATTAACTTGATACATAGTGGGAGCTTTTGGAT 381992 32 100.0 34 ................................ AAAGGGAAAGTATAACTTTAAGAATTTAACACCG 381926 32 100.0 34 ................................ ATAATGACAATTATTTTGTGGATATCTGTGAAGC 381860 32 100.0 34 ................................ TCTATATACAGCATGATACACGGTGCTCCAGAAG 381794 32 100.0 34 ................................ TTCTCCTTGTACCGTGACTGTAAAATTGAATTCT 381728 32 100.0 34 ................................ GCACGGAATGTGTAAAGTGGTATTTTGCATCGCC 381662 32 96.9 33 .............C.................. CCATCCACATAAAACCCTGCAGGCAGCTGCTCT 381597 32 96.9 34 .............C.................. TGGTTTGCAGACATATCATTGAATTGTTCGTCTG 381531 32 96.9 34 .............C.................. CTCAAATCCATCAAGTGAAAAAAGATTTGTACTT 381465 32 96.9 36 .............C.................. AGCCTTTACTGCATCGTCCTTCTCCTGGCTGAGAAC 381397 32 96.9 33 .............C.................. ACGACCGTCATTGTAAGTTTTGCCAACATGACA 381332 32 100.0 35 ................................ TTCTGAAAATAGAGGACCTGCAGGAGCAGATAGAT 381265 32 93.8 32 .................T............T. ATCAACCCTGCTTTAATGAGTTCGTCTCTCGC 381201 32 81.2 34 .....A..C..T.C..TT.............. TATCATACGTATGTATTAAATGTTCAAAATCAAG 381135 32 81.2 35 .....A..C..T.CG..T.............. AGTTCGTCAATACCGGTTGTAGCTGTTTTTATATC 381068 32 75.0 33 .....A..C..TACG.TT.............. GTTTTAGGTGTATGCCATTTACTTACCTCAACA 381003 32 78.1 34 .....A..C..TACG..T.............. AGCAGATGCACGATACACATAATAATTACCCGCT 380937 32 78.1 34 .....A..C.TT.CG..T.............. AATGATACTTACAAAACAATCCAGATTACGCGTA 380871 32 100.0 34 ................................ TTTAATATTCACTCCATCTACTTGTACAACTTTT 380805 32 96.9 33 ...........T.................... GACCATGAGGATTTTCTAAGCATCTTTGATTTC 380740 32 96.9 34 ...A............................ AGATCCGTGGACTGTCAGATGCAGAACTGCAGGA 380674 32 96.9 33 ...........T.................... AAAAAGACTTGCCGTATGATGCACGGCGCCTGC 380609 32 96.9 34 ...........T.................... CATTTATCCACATAATACTTTGCAACTGCAATGA 380543 32 90.6 0 ...........T.C..............G... | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 95.2 34 GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT # Left flank : AATATTTCATTAGCGTTATATCTGATAGATACAAACGAATATTTGATTGCTTATTACCCTTAAAAACAGAACTAAAAATAAATGTAATTATTTGTTTGATAAATATGGAGATTAATTTTATATGTTTAGGACAAACATACACGATATAGATATTTTTTAGTATACTGGGGATCATTTTCTTGATTTATCTATGTGGTTATTCAGTAATACTAAGTAAAAAGTATTATTTGTATCATTTATTATGTAATATGTGAGTAGAAAAATCAGTGTTATTTGTTTTATATAGTAAAAGCAAAAGCAGTTTACAGTTTTAAGAGAGAGATAAGCAAGGTGCGAATGTATAGTGCACATGAAATTACCGGGGGATTCGCACCAAAAAAGTGCTTAAATATTATGGACATAAATGTTTTGATGGTTTATCATATAAAGGTATTTAGAAATATTTGTGTAAAAGTTATATTTGTAGTCTAAATCTTTATGTTTTTTTGAATGTTTTTGCT # Right flank : ATGGATATCAAATGATATATCGAACTTATATACAATATAATATTAGATGGAAAGACAGATGAAAATATGGATTGAAATATTGAATATATGTTGAGAAAAGAAATGACCATAGCCAAATATATAAGAAGTATATTTCACAATCTGTAGGAAAGAGTACATCAAAAGGCCATGTTGAGCCAGTTCATAATTCTCTTGCTAAGCGCAGCAGAAGGTGTACTATTCCATATAAAGATAAAAGAGGTTGGAATTTTGGGAGGAAAAGAAGCATCAAGAGGTTTTTTATATCAGGCATTTGCTTCCGTTCTTGAAGCGTTGTGTCAGAAAAATTGGGATAAAATTTATATAGAATTAAAGTCGAATGATGATAAAGTTGATATTGCATTAGAAGAAAATGGCAGAATTATTAAAAGTATTCAGGTGAAATCAACAATTAATACTTTTAGCAAAAGTTCAATACAAACATGGCTAAGTGATCTTATTCGTGACGATGTAGGTTCGGC # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 386576-385295 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDJ01000002.1 Eisenbergiella tayi strain DSM 26961 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 386575 32 100.0 34 ................................ CAGATACTCCTGAATGATGTTATCAATGACAATT 386509 32 100.0 35 ................................ TGCCATAGTGGTATGGTGGGATGAACATGTGGCAC 386442 32 100.0 33 ................................ TGCCGTATTTATGATAAAGCCAAAGAACAGTCT 386377 32 100.0 34 ................................ CGCATGAAGGCATGTAAAAAGTTTCAGGGTTCCC 386311 32 100.0 35 ................................ AGATAGGCCTCCGTGGCACTGTGCATACATACACC 386244 32 100.0 34 ................................ GCGCTGTCTGTACCATTGCCAGATACGCTATTAC 386178 32 100.0 33 ................................ TTAAAGAATTGCATGAACTCGGGGAAATGCAGG 386113 32 100.0 34 ................................ GTAAAAATGCAGCTAATCTAACAGGCCAATATTT 386047 32 100.0 34 ................................ ATGCGAAATTAAGCGCCAGCGGTGCCAAGCGGTG 385981 32 100.0 33 ................................ AATGCAGTTAGCTCTGATACGCGGACCGCACTA 385916 32 96.9 33 ................T............... AAACACAGGGATTAAAGCGAGCCCTACAGTTGG 385851 32 100.0 32 ................................ TTAACAATTATAGATTGAAGAAAGAGGAAGAA 385787 32 100.0 34 ................................ CTCTGCTGCAAAATATATTATTAAAGACATTGAA 385721 32 100.0 34 ................................ ATCCATTTTCTGTTCATTGACCCAATCAGTAATA 385655 32 100.0 33 ................................ TGTATCACAAGCATCAGATAAACCATTCCTATC 385590 32 96.9 33 ...........C.................... TCTTCCGATAGTACCAAAAGAAAAGGTGGAGTA 385525 32 96.9 34 ...........C.................... ACATCATCCTTCATCTGGGCGGCAGCCTTATCCA 385459 32 93.8 34 A..................T............ CTTCTGATTTTATTGTGACTCCTGAGTTTGAACA 385393 32 87.5 35 ..T........C.C.........A........ TTTCTTAATAATTTTTCTTTTTTCATCGTATTGTC 385326 32 78.1 0 A..........CA......T..AA...A.... | ========== ====== ====== ====== ================================ =================================== ================== 20 32 97.5 34 GTCGAGGCTTATGTAGCCTCGTGGATTGAAAT # Left flank : TATCATGCGGATTTATGATATTATGAATGAAGTGATGAAGTGTTCCTTTGAAAAAGTGGTACAGGCGAGAGGAAACCGGGCCGGTTTGTATTATCATGGACGGATTGTGGACGCTTTTGAGAGGAAGGATGATGAAGCGGCTGAAAAAATAATGGATGAGCATATGAAAGAGTTGTATGAGAGCTTTTTTAATGATTTTAGGGATTGAGAATGCTGTATGGACTTATTTTATTAAGTAAACGTTATATTGAGTAAAAAAAATTAGTGATATTTGTTTTTAGATGATAAAATAAGAGTGGAGTTTATAATTTTAAGAGGGTCATAAGTAAGGTGCGAATGTATAGTGCACATGAAAATACCGGGGGATTCGCACCAAAAAAGTGCTTAAATATTATGGACATAAATGTTTTGAAGGCTTATTATAAAAATATGTGATGATATATTTGTGTAAAAGTTATATTTGGGGGTTAAATGGTTATGTTTTTTTGAATGTTTTTGCT # Right flank : TGCATGACTGGTACAGACATTATTTATTGTATGTCAAAGTTTATATAACATCGTGTTGAGTTTGGAGGAACAACGCTGCTTATGTTGTCACAATGCTATGAAAAAATTGTAACATCCGAGAAAGCTTCCAACAGAAGATATTGTGGAGGTAATAACAGTTGTGTTGAAGCATTTTAAGGTAATTTATAGTATGAAAAAATAAGTATTTTGATTTAAACTAAAAAGTGTGCATAAATTATTTGTGTAAATATCTGAGTTATTTAAAGTATTATATGAGCCATGTTATAAAATATGGGAAGATCAAACAATTGTAGGAAAAGTATAGAAAAGGGATGAGTTATGGAACCTTCAAAAAAAGATTGGTTACTATATAGGGAAAAGATAGCAGGTTGGCAGGAAGCTTATATGGAAAAGCTAATAAAAGAATATGTCGATTATCTGAATGGTGACGAACCTGCATCTACAAAATTCTGGAGAATGGAAAAGCGTATCAAACAGGA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTTATGTAGCCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGAGGCTTACGTAGCCTCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 398763-397607 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDJ01000002.1 Eisenbergiella tayi strain DSM 26961 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 398762 32 100.0 34 ................................ CACCAGATTCCGGGCGTAATAATCTCGGCTATCC 398696 32 100.0 33 ................................ ACATGAATGGTTTCTTCCGCCATATGGCGCATA 398631 32 100.0 33 ................................ CACAAGAGAAAGACCGTGGCATTCTGCGTGCCG 398566 32 100.0 34 ................................ GTGTCTTGTCATTAATACACGGCACGGGAACTAT 398500 32 100.0 36 ................................ AGACAATCTCAAAGCCAATTCAGGAGGATGAAGAAC 398432 32 100.0 33 ................................ TCCTGGTAGAAAGATCCATATAAATATAACTGG 398367 32 100.0 34 ................................ ATATCCAGATTTGGATTTTTCAAACGATACCCTA 398301 32 100.0 34 ................................ TTTGCTGATTGTCAATGCGGTTATGGTATATATT 398235 32 100.0 35 ................................ AAGATGGGCGACGGCTCCGGATCCATTTACGAAAC 398168 32 100.0 33 ................................ TTTTCAAGATTATCCTTTTGAGTTGTCGTCAGA 398103 32 100.0 34 ................................ CCATATACTAAAACCTCCCCAAAATATCGGTTAC 398037 32 100.0 35 ................................ ATGTGAAAATAGTCTCTGTATAACGGATGTAATTT 397970 32 100.0 35 ................................ ATGGTGGAGACATATCAATCCGGAAGCTGGGGGAT 397903 32 100.0 34 ................................ GATATCAGTAAATGAGTATTTTCTGGAGACCAGA 397837 32 100.0 34 ................................ TTGCCACTCTGGATCCGCATATTTTTGCCACTCT 397771 32 100.0 34 ................................ TGAAAATGAAAAGGAGTAAAAATGAAATGTGTAC 397705 32 96.9 35 .............T.................. CACTATCTGCCAGTGTACCAGAATCGAGGATAAGA 397638 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.8 34 GTCGAAGCCTATACGGCTTCGTGGATTGAAAT # Left flank : AGGCTTGATATATAAATATGAATTACATTTTGAAGTAATATTTTTAATGATAAAGTAAAATAAATTCTTACGAATAGGATCTCCATGAATGTATAAATGAACTTTGGGTAATTTGCGGATTAGTGAAGAAAGTTACTTATCATTTTAAATTATTTATGCTATACTTTGATTCATAGAATAAAACTTTACATTACTGTTTTGTTGTTATAGCATAAGGAATAAGAACAATAAATTTTATAGTCATATAATAGTTTATTGTTAGCATGATTAGAGTTTTATTGAGTAAAAGTACTTGTTTAATTATGAAATTTGCGAACAGAGTTATTGTTAGTGCGAATAGGAAGTGCACATGAAATTACCGAGAGATTCGCACCTGAAAAAGAGTTGTTTTAATGGGGAAGAGATTGAAAATAATTTATATAAAGATATTATGAGGTGGAAAATATAATAAGTATATAATTAAGTTTGTGTTATGAGATTGTTTTTTGGATATTTTTGCT # Right flank : TGTAAGAAGTCGCACCTTGCATTGATGTAAATTGCATATTATTCATAGTTAAAACTTATCCAATAGTAAGCTGTCGTTTTATGTATCTAAGAAATAAAAGAATACATCCAATAGACAACACATTTTCGCCTTTATGGCATTTGGCAATTATTATCTATAGTAAAATAAAGAACGATTTATAATATATACATTCTCTTACAAAATGAGGTGAAAAAATGGGAAAGAATGAAGATTCTTTCTTCCTGAATTACCTGCCAATAAGTATAACTTTGGTATCCCTGGAAAAGGCCGAATTACCTCCATTTTTGGGTTCTACCCTTCGCGGTGTGATTGGACAGGCATTATTTCAGGATAAGAATGCCTACAATTATCTATATCACAACGGCAAAATGAGCAGTAATATGCAAGATATAATTAATCCGTATGTGCTCATTCCTCCTGATACAAAGAAGAAAATATATTTTGAAAAAGAAGAGCTAAACTTCAAAATACTTCTTCTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCCTATACGGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGAAGCCTATACGGCTTCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 400724-399564 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDJ01000002.1 Eisenbergiella tayi strain DSM 26961 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 400723 32 100.0 35 ................................ CTTGGAATATCCCGGAACCGTGTATACCTTTACTA 400656 32 100.0 36 ................................ ACCAAGTTATTCTAGGAGCTTTTACAACGGTAATAC 400588 32 100.0 35 ................................ GGATTTTTGTAGCAGTAAGGGGATAGATGATACCA 400521 32 100.0 35 ................................ CACAGATATACAGTTTTTGGGAAAGAGTGGACCTA 400454 32 100.0 34 ................................ GCCTTCTTGCGAATTTAAGACACTGGCAAATGGT 400388 32 100.0 35 ................................ GGCCATACTCAATAACATTGTGCATATCGTACCTG 400321 32 100.0 33 ................................ CCTGGGGAAAATAGCTAAATGGTTTGCAGATAT 400256 32 100.0 34 ................................ AGTATGAACAATATCGGTATCGACACGATCGCTA 400190 32 100.0 32 ................................ CTTTCCGGTACAGTGCAAAATCTGAAAATTGA 400126 32 100.0 33 ................................ TAATATAGGATTATATGAACAGATAAGAAAAGC 400061 32 100.0 35 ................................ AAACTGTGTTAAAAGCTGAGTCTGCCCGCTTTCAT 399994 32 100.0 36 ................................ TTATTTTCTACGGGTGTCCGGGTTGGAGAATTAATC 399926 32 100.0 33 ................................ GCCATAAGTGGATGCAGAAGGGGTACTTGTTTC 399861 32 100.0 34 ................................ TGTTTTTCGCCGAAAAATGGACAGCTATTAAGGA 399795 32 100.0 33 ................................ CGTCATATTGTCTACTTGCTCTAAAGTATCATA 399730 32 100.0 35 ................................ TTCCTGATTTTACAAACAGAGGCGGGAATAAAAAG 399663 32 100.0 33 ................................ CACAAGAGCAATTGTCTTACTATGCTGTTCTCG 399598 31 90.6 0 .............A...........G-..... | A,TTT [399573,399575] ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.5 34 GTCACCACCTTGCGGGTGGTGTGGATTGAAAT # Left flank : ATGAATATCCACCTTTTTTCTGGAAATAGGAGGCTGTCATGCTGGTATTAATTACTTATGATGTGAATACGGAAACTGCCGCGGGTAAGTCCCGGTTAAGAAAAGTAGCAAAGCAATGTGTGAATTATGGAACAAGAGTACAGAATTCTGTATTCGAGTGTGTTCTGGATCCCGGACAGTGTTTAATGCTGAAAGCTGCATTAACGGAATTGATTGATGAAAATGTGGATAGTCTCAGATTTTATTATTTGGGGAATCAGAATAAGGCACGGGTTGAACATGTTGGAGTGAATAAGGGGATTAATGTGAAAGAGCCTCTGATTTTTTAGTGCGAACCTGAAGCGCACATGAAATCCCCGGGGGATTCGTACCGGAATTTTGATGAGATATTGCTTGGGGTTGCTTTTTGATGTGGAAGAATGTAAGATGTAAAGTGAATTGGGTGTGGATTGTTGGTGAAGATGAATAGGAATTAAGAGTGGTTTTTGTGCAAAATTGCT # Right flank : ATATTATTGCGATTAGGGTATTTATGTAAATCTCATAAGTATATTGCCATAACATTTTTTGTAGGCAATACGATGGGGAATTCATAGAGAAGAGTATGATTTGAGATAGGGAACACGATAAATATATTATGAATACTTAAGCAAATGACGTTACCAGTCTGTCTTGTTTTGTCACGGATAGAAAATATATTAGAAAGATTACCATTATTAATCATAATTTTCATGGATAAGTTATTATGGCAGGATGTAGATATTATAAAAGGTTTTAGGTGGAAGTAGATGGAGATTTACTGAATGAAGGAGGCTTGATATATAAATATGAATTACATTTTGAAGTAATATTTTTAATGATAAAGTAAAATAAATTCTTACGAATAGGATCTCCATGAATGTATAAATGAACTTTGGGTAATTTGCGGATTAGTGAAGAAAGTTACTTATCATTTTAAATTATTTATGCTATACTTTGATTCATAGAATAAAACTTTACATTACTGTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTTGCGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACCACCTTGCGGGTGGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 409654-408560 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDJ01000002.1 Eisenbergiella tayi strain DSM 26961 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 409653 32 100.0 33 ................................ TGCTGTACAAAAGAGTGTGACTTTCAAAATTGA 409588 32 100.0 36 ................................ AGGTAAAAGCCAGCTTTACTCCACTGTGATATTATT 409520 32 100.0 34 ................................ TTGTAACCCTTAATCTTCCGGACAGCATAAGGCC 409454 32 100.0 33 ................................ CATACTCATTCTCTATCAGGCACCAGTGCTTAT 409389 32 100.0 34 ................................ ATCCAGGCTCCCCATGGCCTCTACCAGGCAATAC 409323 32 100.0 35 ................................ GTTAATATCCTTTACCAAGCGATAATGCGGGAATT 409256 32 100.0 33 ................................ GTATATATTGATCCTTGTATTTGGGCCAACGCC 409191 32 100.0 34 ................................ TTCTTCCTCATTTGACACGGCAAAATGGACAATG 409125 32 100.0 35 ................................ CCTTACGAACGCCCCACCACATAAATACGATACCG 409058 32 100.0 33 ................................ GGCGCATGAAGGAGGCATGGAAACCATGAAGAA 408993 32 100.0 36 ................................ ACTTCATCGTCGTTCATGTTTTCACCTCCTTGTCTT 408925 32 100.0 34 ................................ CTCCCGGCATAATATATCCTACCCGCCGGCAATT 408859 32 100.0 35 ................................ TTATAATCCATGGCTTTTATAACATCACGCCAGGT 408792 32 96.9 35 ..........A..................... CCAGCAAACGATGGAAAAATATAAAAAGGTTTTGA 408725 32 96.9 34 ..........A..................... ATCTACCATACAGGTTCCGTAATCATTGTCATCT 408659 32 93.8 36 .....G....A..................... AAACATGATCAAGGCATCGGGGGCCAGGCGGTCTTT 408591 32 75.0 0 ......T.GGA...AA....A.........T. | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 97.8 34 GTCGAAGCCTTTGCGGCTTCGTGGATTGAAAT # Left flank : TGATATGATTGATTTTATTTTGCAGAACAGTTATTTTTAATTTATTTATCTATGGTAATTATACACTTGCGTGTATGAAATAGGAAGATAATTCTTGGGAAGAGTTGAGGGGAATGAGGGGGAAGGGGTTACTGGATAGTGTTGAGAATAAAAATTGAAATTTGAGTAATTTACGAAATGGAGAAGAAAGTTTCTTATCATTTTGAAAAATATGTGATATACTTTTATTTATGGTATTAGGCTTTTGGAAGGTAAGTTTTTTGATGATATGAATGGAGGATTTGAGAAAATAGTTGGTCAATTGTGATATTTGAGAATTGAGTTATTTGGTGCGAATAGGAAGTGTACATGAAAATCCCGGGAGATTCGCACCTGAAAAATGGTGGATTTAATGGTGAAAAGATAGAAAATGATTAAAATGTGGTTATTGTGAGTGGGGATATTATAATATGTGTATAGATTGTTTTTAAAAATGAGATTGTTTTTTGGATGTTTTTGCT # Right flank : AGATTAATATCCATAGAGTTCACATACTGCTCGAAGCCTTTACCGTGTCAAGTATCAAAAAATATTTCCAACATCTACATAAAAATAGTAATTATAAACAAAAAATATATTTCATGCTATAATTAGCAAGGTAAAATAAACAAAAAACACCACACTTTTGGAGGAACATTATGTTCTTAGCTCATATCAGTGAAGATAAGCTTCGTGAACAAAGTATTCTTGAGCATCTGGAGGGGACTGCTGAATTAGCAGGTGAATTTGCCTCTGCATTTGGATCTGAAGCTTGGGGATATGGCTGCGGCATGATGCATGATATCGGCAAATATTCCGATAGTTTTCAGAAGCGTATTCATGGGGGAAAGCTGACGGACCATGCCACTGCAGGTGCCAGGGAATTATATCAAAGACATAATTATGTCTGCGCATATTGTATATCAGGGCATCATACCGGACTTTTAGATGGAGGAAGTGCGGCCGACGTGGGAGGCGAAGCCACATTA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCCTTTGCGGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAAGCCTTTGCGGCTTCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 545967-545204 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPDJ01000002.1 Eisenbergiella tayi strain DSM 26961 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 545966 32 100.0 34 ................................ TGCCTTCTTGCGGTCAAACTCTGCACGGTACTTG 545900 32 100.0 34 ................................ GGAAGTATCCCGCAAAGATTATGATGCTGAACTT 545834 32 100.0 36 ................................ ACAGTGTATTGATATAAATAATGCTACCTGTAAATT 545766 32 100.0 34 ................................ AATATACAGACCGCAGTAAATTCCTTTCGGGTAT 545700 32 100.0 34 ................................ GGATAAACAGGCATAGGCAAGAAAGGACGTATGG 545634 32 100.0 35 ................................ AATTGTACTAACCGAAGGAAATTTAGCCATTGTAA 545567 32 100.0 34 ................................ ATTCCCGGTCTGCGGAGTCTTTCCTGCCAGCAGC 545501 32 100.0 34 ................................ GTTCAACAGAGTTTTAATCTCTTCATGCATTTCA 545435 32 100.0 33 ................................ CCAATCGATTTGCATTCTTCAGGAGAGTTATAT 545370 32 93.8 36 ...........CG................... ATCCAGGCTGGCGGCGGTGTTCCCCTCGGTTAAAAG 545302 32 90.6 35 ..........A.GT.................. CAACATGGACTTGGGCGGCAATGTAGATTTTCTAG 545235 31 87.5 0 ........T-.....A...T............ | G [545223] ========== ====== ====== ====== ================================ ==================================== ================== 12 32 97.7 35 GTCGAAGCCCTTACGGCTTCGTGGATTGAAAT # Left flank : AATTTCACTCATAAGTAAAACATTGATTTGAAAAAAGAATATTGCGAAAGATTTGAATCAATATGAAATTTTTCTTAGATATAGATACTGCATGGAATATTATAAAAGTCTTAGTTGAAGTATAGGAAACTATGTACAATTTACGAATTAATGAAGAAAGTTGCTTATCACTTTGAATTTTTTATGCTATACTTTAATTTATAGAAAAGATTGTTATTGTATAAGTATAACAAAATTCAAAGTAATATGTTAATTTGATGTTGGTATGAATAGAGTTTTCAAGGGTTAAGGGCACTGAATCAATTGGGAAAAAGGGAGCGATTTATGTTGGTGCGAATAGGAAGCGTACATGAAAGTCCTGGGAGATTCGCACCAGAAAAAGAGATGTTATAGTGGTGAACAGATTGAAAATGATTTAAATAAAGATTATATGAGATAGAAAATAAAATAATTATATAAATTAAGTTTGTGTAATGAGATTATTTTTAGTTATATTTGCT # Right flank : AAGTTCGCCCCTGGAGAAATCCAGGGATTTTTTTGTATAAGCCCTGCGGTATTGTGAGTGAAAAACAAAATTCAAAATATTGTGAAAAAGTCATTGTTTTGTGGAAGAATGATTATCAAAGGATAATGAGCTATATTATAAAAGAATATTTTAAGAATGTAAAAGAGTGAAAGTTCAAAATTAACAAAACTATCAGAGAATCAATAATAGAAGAATTATTGATTCTCTGATATATTGAAACAAATGAATGTATTTATATTTGTTTAATGCAGATGAAACAATAAAATATCATAAGAGTAAGCCAACTGAATGATAGAAAGGATTTGAAACACAGGTTAAATATTATGAAATGGGAGATTGTCTGTGTTTTGCCCTTTTTTGTAGTGGTTGAAACATATGCTAATTCGTAATATCAAAAGGACAGAATTAGTAATCAGGCTGCTTACAAGGGACTAAGTGATGGAGATTGTAAAAGCATATGAGTTATGGAGGTGCAGTAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCCCTTACGGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAAGCCCTTGCGGCTTCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //