Array 1 32665-29719 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFH01000027.1 Streptococcus ruminantium strain DAT741, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 32664 36 100.0 30 .................................... CTATGTTGTTGATTTTAACCAAGCGCTGTT 32598 36 100.0 30 .................................... ATGTGCCAGTGGCTTTATTTACTACTTCCA 32532 36 97.2 30 ...........................T........ AGGTCAACTGTTACTCTGACATCTGCCATT 32466 36 100.0 30 .................................... GCAACTCCTTATCAAATTTCTCTTTTAATT 32400 36 100.0 30 .................................... TCTAAAACATTTCTAAATTTTTCAACTTTC 32334 36 100.0 30 .................................... ACATCGCCTTTCCTCTCTACGCCATAGAGT 32268 36 100.0 30 .................................... GAGGAGTGGTTAAATTCCTTGAAGGTTCTT 32202 36 100.0 30 .................................... GCCTTTTCATTATACCAATAACACGTTCAG 32136 36 100.0 30 .................................... AATTAAGGTCTGGGAAAACTTGTAAGCCTT 32070 36 100.0 30 .................................... TTAAAATGAAAAAACGTGACATTATCAAAA 32004 36 100.0 30 .................................... AAAGGCGCAGGTATGACACCTGAAATTAAA 31938 36 100.0 30 .................................... TCGGCATACTTTGCTCCTGAACTATGCTAA 31872 36 100.0 30 .................................... TATAAGAAGAATGGTCAAGAAGACGAGATG 31806 36 100.0 30 .................................... TAACTTCTGTTGCACTCATGGAAAATTCCT 31740 36 100.0 30 .................................... TCGCTCACCTAAATACCTCCAGCTACTCCG 31674 36 100.0 30 .................................... ATGCTCTTAAAAATTGCTGATTGGGAGTAG 31608 36 100.0 29 .................................... CAACCTCGTCCCTTCCCATATCTAACCCA 31543 36 100.0 30 .................................... CATACTAACTTGCCAGGAGATGTCATCCTC 31477 36 100.0 30 .................................... AAACGACTGAACGAAAAACGGATACATCCA 31411 36 100.0 30 .................................... TTGTGTAAGTCTCCCAAGCTCCCATAATGA 31345 36 100.0 30 .................................... AATTTGCTGATTTAACAACTGATGGCTATG 31279 36 100.0 30 .................................... GACCGTCTTTGTTCAATACTTCTTTGTGTA 31213 36 100.0 30 .................................... GACCGTCTTTGTTCAATACTTCTTTGTGTA 31147 36 100.0 30 .................................... GAAAAATTCAATTTTTAAGTATTGGTGACC 31081 36 100.0 30 .................................... CCAATGCTTGATTATCTCTAAACAACTTTA 31015 36 100.0 30 .................................... AGATATTTGCAGATTGGGACTTATTACGGA 30949 36 100.0 30 .................................... TTTAATGAGAGGAGGCAGAAAAATGTCACA 30883 36 100.0 30 .................................... CAAGTCTTCCAATCCATTCTTACTGTGCCA 30817 36 100.0 29 .................................... TGATTTCAACTACTCTAGCGCCTTTAGAA 30752 36 100.0 30 .................................... GGTAAGATTATTTCCTCAAAATAGGGGAAT 30686 36 100.0 30 .................................... TAGCTGGTTCCGGACTGTCGTTAACTGTTG 30620 36 100.0 30 .................................... TATTGTCTTGTATAGCCACTGCATTACCCA 30554 36 100.0 30 .................................... TCCACCACGAAATTCAAAGACAAGTGGATG 30488 36 97.2 30 ...................C................ TAGATTTAATCTTACCCAATACAAAGTCTA 30422 36 100.0 30 .................................... ATGATATACTTAATCCATAAAAGAATTAAA 30356 36 100.0 30 .................................... AAGCTATCTTAGATGGTACAGGTCAAGCAG 30290 36 100.0 29 .................................... AACTCGGATGCGAGATGGGTCCATACTTT 30225 36 100.0 30 .................................... CTAGGTGCTGTAATTGATAAAAGTGAACTA 30159 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 30086 36 75.0 30 ...C...G.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA AG [30077] 30018 36 100.0 30 .................................... CGTTGTCAGCTGTAATCGTGATATTCGATT 29952 36 100.0 30 .................................... CCTGCGCTTTATTGTTTGTGGTAGTTGCTT 29886 36 100.0 30 .................................... ATCCTTCTAAGTTTTTACCAGCACGGATTG 29820 36 100.0 30 .................................... AATTTTGCGGTAAGGTCAAGAAAAAAGTCA 29754 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== ===================================== ================== 45 36 98.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : ACAATATGATTAGATAATGATATTGTTCTTGTGTTCTTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATTTAAGTAACAGTAAAACCTATGTTGTTGATTTTAACCAAGCGCTGTT # Right flank : CTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGAACGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACTTTTCTATCTTGTAATGTAAGATAATTTGTCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 33667-33170 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFH01000027.1 Streptococcus ruminantium strain DAT741, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33666 36 100.0 30 .................................... TCATCGCCCGTCGCAATCGAAAGTGTACTT 33600 36 100.0 30 .................................... CTGAAGAATGCGACATCGTTAGAAGACTTC 33534 36 100.0 30 .................................... CTGTGACTGTTCTATGTACTGTGAACGTGC 33468 36 100.0 30 .................................... TGAATTTTTCCAATAACAAGAGAGCCTACG 33402 36 100.0 29 .................................... TTGTCAAACTCTCAATCCCATCATCAATT 33337 36 100.0 30 .................................... TGATAAGCTCGTACCTACGACGCAAAGCCG 33271 36 100.0 30 .................................... ATTTTGGAGCTACTAAAGATTGGCTCCCTA 33205 36 83.3 0 .C...............GC....A...T.......T | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATACTTGGAGTAAGAGAGTATAAAAATCATTTGAG # Right flank : GCTTGACAATATGATTAGATAATGATATTGTTCTTGTGTTCTTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATTTAAGTAACAGTAAAACCTATGTTGTTGATTTTAACCAAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //