Array 1 695032-695206 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSS01000003.1 Streptomyces libani subsp. libani strain JCM 4322 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 695032 31 100.0 44 ............................... GACCGAGCCCGAGGACACGGGCGGTGACGGCGGCACGTACTCCG 695107 31 96.8 38 ...................C........... GACGTCCGAGCCGCCGACCTCTCAGCCGCCGACCTCTC 695176 31 93.5 0 .........................G..C.. | ========== ====== ====== ====== =============================== ============================================ ================== 3 31 96.8 42 AGCCGCCGACGGAGGAGCCGAGCACTCCGGA # Left flank : GGTGGCGCCGTCCCAGGTCGCCGACGCGGTGCCGCCGGAGCTGGACGGCCTGGTCATGCGGTCGCTGGCGAAGGACCCCGACGACCGCTTCCAGTCCGCCGAGGAGATGCGCGGCCTGGTCCAGTACTCGCTGCAGATGCTGCACGAGCAGGGCGGCCACACCGGCACCTGGAGCACCGGCCCGGTCGCCATGCACGAGGGCGGGCTCACCCCGTCGATGGGCACCGCGGCCACCACGGCGCTGCCGCACCCCGACGCCGGCCAGACCACGGCGCAGCCGATCCTGACGCCCGGTAGGCGCGACGACGACGGCGGTTTCGACGGCGGGCCCCGGCCGTCCAAGGGCGGCCGCGGCAAGATCTGGCTGATCGCGGCGCTGGCGGTGATCGCCATTGCGGTGGGTGTCGCCTTCGCGCTGCAGAACACCGGCGGCCAGGACCAGAAGCACGAGACTCCCACCACGCAGTCGCCTTCGCCGTCGCAGGACGACAAGACGAGCG # Right flank : AAGAGCCGTCGGACGAGCCCACCGATCCCACCGAGCCCACGGACCCCACGGGCGGGACCGACGACGGTGGCGCGGGCACCGGTGGCCCGGACAGCGGCTTGACGTCGGGCGCGACCGGCTGACGGGTGCCCCGCTCCCCGTTCAGCGGGTGAACGCGTTCCGTACGGCCCGGTACTCGCGGGTCCACCACACGGCCAGGGCGGCCGCCGCCGGGAACTGAGGATCGGTGCGGCGGTCGCCCAGCTGGTAGCGCCAGGTGAGCATCCAGAAGTCGTTCAGCCGCTCCCACCACACCCGGTGGACGGCCGCCGCGAGTTCCTCGGCACCGGCTCCGCAGGCGCTGCGGTAGGCGCCCGCGTACGCCGCCACCTTGGCCAGGTCCAGGGTGCCGCAGGGGCGTACGAAGAAGATCGCGGCGGCGCGTACCGCCTCCTCGGCGCGCGGCTGGACGCCCAGCCGGTCCCAGTCGACGATCGCGGTCGGTTCCGTGCCCCGGTAGA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCGCCGACGGAGGAGCCGAGCACTCCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 577188-578362 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSS01000006.1 Streptomyces libani subsp. libani strain JCM 4322 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 577188 37 62.2 37 CGC.GC.GTCG..C..A.....A...A.A........ TTCGGAGGCACCATGGAGCGGGCGCAGATCGGAACCA 577262 37 70.3 35 ...AA..C..T.....A.AA..A...AA.......G. ACCAGCATCCGCCGTACAACTTCCGGGTGCCAGCC 577334 36 86.5 35 .........A...-..A.......T.A.......... AGCATGGCTCGCAGGGTGTCTGACCCGCCCAGCTC 577405 34 81.1 37 .............C.---....A...A.........T GACTTCCCCGTCCTCCCCGAAGACGGCAACGCCGGCG 577476 37 81.1 37 .......C.....CT.A.....A...A......T... TCCGCGTCGGGCGTGACGGTGATGCCAGATGGCTGGA 577550 35 81.1 37 ........T....-..A.....AT..A.-........ GCCCGCGAAGTCGACCTGATGAGCGCCGAGCCCGGGA 577622 37 81.1 35 ............TCA.AA..A.....A.......... AAAGTGATGCATGGAACTGGCGGAAACGGGGGAAG 577694 37 56.8 31 ...A..A..T..TC.AACC....TTC.C..C...CC. GCGGTTACGACGGCCCCCAACCCCCCAGGCC G [577725] 577763 37 89.2 6 .............C........A...A..G....... ATCACC Deletion [577806] 577806 37 56.8 35 .GAA.C.GAATT.C...AC..CA...A....T..... AAGCAGCTGCTCGACGAGGCGGCCGTGTGCGACAC CA [577829] 577880 36 83.8 39 .........-T..G..A.....A...A.......... ACGGACAAGGTGACCTTCCCCACCTACGGCATCGGCGGC 577955 37 86.5 36 .......C..T..C.A..........A.......... GACGCGATGACACGACTTAACCGGGAAGACGGTGAA TTTCC [577969] 578033 37 86.5 35 .C........T.........A..T..A.......... CTCCGGCGCTGTCCGCGATGATCTGCCGGTCTGTG 578105 37 91.9 38 .........A.....G..............C...... GAGAGCCGGCGCGAGGTTGCGCGTGAAGAACTGGAAGA 578180 37 97.3 35 .........................A........... TACCTGGCGACGATCAACGTGCCGCCTGTCGGTGG 578253 37 100.0 36 ..................................... TGCTGGAGGCGAGTGACGAGCTGCGGGCCGAGGATC 578326 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 81.9 34 GTGGCGGTCGCCCTCCGGGGCGGCCGGGGATCGCAAC # Left flank : ACCCGCGTCGCCCCCAACAAGCCGGAAGACCTGGCCAAGGGCAAGGTCACCGAGATGGGCAACAAGCACTACGTCCCCTACGGCCTGTACCGCGGCCACGGCTTCTACAGCGGAGCACTCGGCACGAAGGCGGACATCAGCTCGGAAGACCTCGAAGCCTTCTGGCACGCCATGACCATGATGTTCGACCACGACCGGGCTTCATCCCGCGGCGAAATGGCCCTCCGCGGCCTCTACATCTTCAGCCACTCCGACGCATACGGCCGCGCCCCCGCACACAAACTCTTCAGCCTGATCACCATCAAGCCGCTCGGGCACAGCGAAGCCCGCTCCTGGGACGACTACGCCGACCGAATCGACATTAACGAGGACGCCGTACCCGACAACGTCACCCTCACCCGCCTCATTGGCTGAAATCGCGAAACGCCTGCGGCAGACACCCATTCAAGACAGCTGGGATCGCAACCTGCGCCGCTCCCGCCTCGCACAGCCTGCGACAC # Right flank : ACCTGGTAGGTCTCGCCGATCCG # Questionable array : NO Score: 4.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.10, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [49-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24-4593 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSS01000010.1 Streptomyces libani subsp. libani strain JCM 4322 sequence10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================== ================== 24 37 100.0 38 ..................................... CCGTTGTGGGAGAAGCCCGATGCCAGGGTCGGCGTGGT 99 36 86.5 35 .............-.G......A...A.....A.... TTGGTCATGACGCGGAACCGAAGCGACGCCTCGGG 170 37 86.5 36 ...........A......C...A...A.......G.. ACCACAGCGTGTGCCGTCTACCCGGCCCGCCGGCCG 243 37 83.8 36 ...........T.C.TA.....A...A.......... TAACAAGGCAGGCCCTGGGAGTAGCCGGCGGTGCCG 317 36 83.8 35 .............-.G..T...A...A.A........ GGATTCTCCGCCGCAAAGTAGTGCTACTACGCCGG 388 34 81.1 37 .............--.A.....AT..A.-........ GCCCGCGAAGTCGACCTGATGAGCGCCGAGCCCGGGA 459 37 78.4 29 .....A.......CA.AA..AT....A.......... AAAGTGATGCATGGAACTGGCGGAAAGGA 525 37 59.5 37 .G.AA...G..GA..TCCTT.AA...A..T....... GCGCCCCGCGGTTACGACGGCCCCCAACCCTCAGACC 599 37 83.8 36 .....A.....G.......C..A.T.A.......... CTTTTCCGCGATCGGACCGAGGTGCACGTCGCTGTG 672 37 94.6 32 ..........................A......T... CTGTGGACTCAGAGCAGGACGGCATGGAGCAC 741 37 81.1 94 ....T.....T.T....AA.....T.A.......... ATCTACTGCCCGTTCTGCGCCTACGGCGATGGACTGCAGGACAGCGGAGGACCGCAACGGCATCATCTTCTGCGCGGCAATGTTCGGCGTTGTC 872 36 81.1 35 ..A...C...T..-........A.T.A.......... TGGGCGGCGGAATTCTTGGTGTGATGGGCGGAAGC 944 37 78.4 180 ......A....A.C.A....T....CA.A........ TACACGACCGGCGACGAGTACGGAAAGAAGAGGACCGTGGCGGTCGCCCTTGGGCGACTGGGGTTCACAACTGGTGTCTGGTGACCTCGGGGTGTAGGCCCCCATGAGGCGGTGGTTTCCTCTCGGGGCGACGAGGATCGCAACTCCACCAGCGGTGTGGAAGCGTACGGGGCGGCCCGC 1162 37 73.0 35 .....A.CT...TGT.A...T...T.A.......... GACAGGCGATCCTCCTACCTGCCGGTGTGAAGCTT 1234 37 78.4 34 ........T..G.C.T...A..A...A.....T.... GGCGGTCAGTGAGGGTGGTGAAATACTCGATGGC 1306 37 89.2 36 T.........TT.......C................. GGCCTCGACAGCGACGGCCAACCCGTCACCGCTACC 1381 35 83.8 35 .......A......G.A.--......A.......... ATCGCGGTGGCTGCGGTCATGTTCTGCGGCGCCTG 1451 37 91.9 29 ..........T.A....A................... GAGTCCGTCTGGGGCAACGCTCCGCCTCC 1517 37 75.7 38 .CCC...G...T........T.A...A.....A.... ACTGGCGAGGCCGCCGAGCGGGCCAGGGCCACGCTCGT T [1523] 1593 36 86.5 36 ....T.......G-.....T.........G....... GTCTCTGCCCGCGAGGACGCCTGGCACCGCCTCGGC 1666 37 67.6 31 ...........T.C.T...A...T..A..CAAC.GG. CCGAGGCGCTACCCTCGATGCGCTGGATACC 1735 37 75.7 36 ..........T..CG.A.AA......A.AG....... GCCTACTACGTCCACATCGCCGCTGCCATAGGCGAC 1808 37 86.5 38 .....A....T...........C...A........C. TCTGAGGTCTCCGGGGACACGTAGAAGCGGCTGCCGCC 1883 35 83.8 36 A...........T..--A........A.......... ATCAACACGCGGATGGTGGAGGGCGTCAAGTACGCC 1954 37 91.9 36 .G..........T..A..................... TCCTCGGTGACCGTGCTGACCGACGACTCCCCGTTG 2027 37 94.6 37 ......................A...A.......... GCTGCGGTGCGTGGCTCCTCCGAAACCTGGGTCAAGC 2101 37 83.8 35 .............C.T......A...T..G..T.... TTGCGTGGCATTGACGACGCGAACGTCCGCAAGGA 2173 36 83.8 35 .............-.T.A........A..G..A.... ACGGTGCAGGCCGCCACCATCCCCGGTATTCCCGG 2244 37 89.2 37 .............C.T..........T..G....... GTTCCCGAGCTCATTCCCGAGCCGCAGGATCTCGACC 2318 35 78.4 34 .......CGT...C....--......T..G....... CCGGCTATGACGCCCCACCGGGCGGCGACCGAGG 2388 37 91.9 36 .............C...T..............T.... AGCAGCGGCGCCGGGGCCACGGTCGGGTACAGCACC C [2404] 2462 37 100.0 36 ..................................... CCGCAGGTCAGATCGAGCAACACGGCGAGCAACAAC G [2482] 2536 37 97.3 37 ........................T............ GCCGCGGCCGGCGCCTGCGCGGGTGGCCTGCTCGGCT 2610 37 97.3 35 ..........................A.......... ACCAGGAGCGGCCCCTCCGTCCGGTCACCGATGAC 2682 37 89.2 37 C...........T.........C.....A........ ATCATCTCCCTACGCCCGGACGCAGCGCTCAGCGCAA 2756 36 91.9 37 ...................-..A...T.......... GCCGTCGGATTCCTCATCCTGGTTGTCCGAATCGCGA 2829 37 86.5 12 .......C..T.....A.........A..T....... GCCCGCGCCGCC Deletion [2878] 2878 37 91.9 37 ..................A.T.....A.......... TTGTTACGCTCGATGCACAGTCGGCACGCCTCACCGG 2952 37 97.3 37 ..........................A.......... TCTGTCGTCCGGGGCCTCCCTACGCCGGCGCCTCATG 3026 37 97.3 36 ...............G..................... GCGTCCACCAGCTGCTCCAATGCCTCGCGGTACTGA 3099 37 100.0 36 ..................................... AAGTTCGTGCAGCGCCTCTTCCAGGCCGGCCGGCAT 3172 37 97.3 38 .......C............................. ACGTACCCCAGCCAGTGTGTGCCCGGGTGGACATCGCC 3247 37 94.6 38 ......................C...A.......... TCTGAGGTCTCCGGGGACACGTAGAAGCGGCTGCCGCC 3322 37 89.2 36 ............T..A.............G.T..... ATCAACACGCGGATGGTGGAGGGCGTCAAGTACGCG 3395 37 91.9 36 ............T....A......T............ TCCTCGGTGACCGTGCTGACCGACGACTCCCCGTTG 3468 37 89.2 39 .........A...........A....A.A........ GCCGCATGGTGGACGCGCTACGGCCGTGGCACCGCGCAG 3544 37 94.6 38 ................A.........A.......... AAGCACGTCGAGGTCACTCCCCAAATGCTGGCCATCCG 3619 36 78.4 108 .........AT..C.T...-......T..T.....T. GTGGCGGTGACGCGGAGGAGATGGCCAACCGGGCTTGGCATTCATCCCTCGGGCAGCCGAGGGATCGCAACGTCTCGCCCGCCAGCCCTGCGGCGGCGACAAGTTCGG 3764 37 81.1 34 ..........TT.C.T......A...T..G....... TTCCTCGACGACATCCTCCGTGAGGAGGGAAGCG 3836 37 91.9 37 .G........T...............A.......... GTGACCGCCTGCGTGGATACCGTGGCCGCCGAAATCA C [3854] 3911 37 83.8 35 .........C..AC......T.....A.........T GCCCCACATCGGCCGGCCGCCGGGGTAGCGGCCGA G [3924] 3984 37 81.1 37 ...........G.CT.C....A....T.....A.... TTCAGTCGGCCGCGGGCCAGTACCCGCGCCTTGGCAT 4058 37 89.2 35 .........A...C.GA.................... CACCAGGGAGATCCCCTTGCTCGCCCCGGGCCATC 4130 37 75.7 27 ...A............AAATT.....A..G..A.... ATCCTCTACGCCGGGATGGACTCCATC Deletion [4194] 4194 37 83.8 36 C.C...........T......A...CT.......... TACCGCGAACTGCTCGCGGCCGCGCCCGAGAACGCC 4267 37 86.5 38 ..........T..C.........T..A..G....... CACCCGAGCCAGTCCGCCACGCGCACGCTGGGCGGCGG 4342 37 83.8 33 ...........T.C.T......A...T.....C.... TGGCTTGCTGGGAGGGCTGGGACGAATTCATCC T [4359] 4413 37 81.1 36 ........T....CTA..A.......T........C. CAGGACCTGTCGGTCGCCGCGAATCCCCGGCGGCTG 4486 37 89.2 34 ...........T.C............T...C...... GTCACGGCCTTGAGCCAGAGGTCCGGAACCGGGC 4557 37 78.4 0 A..........TT...A....A....A........GT | ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================== ================== 60 37 86.2 40 GTGGCGGTCGCCCTCCGGGGCGGCCGGGGATCGCAAC # Left flank : GCGCGCTGTATCTGCGGGGCGTAG # Right flank : TATGCCGGGCACCTGGGCAAAATACGGCGTCGACGGGTGGCGGCCGTCGAACTGGACCCCCTAGGAGTATGCCAAGTAGCGGTCGTCATTTCGGATGGCTGAGGACAACAAGGCTGCTCAGACGCCTCCAGTGACGGCACACCTCTGGGATTTTTCAGGGACTTTCAGCTCTGCCAGAGGGACTTCTGAGGGACTTTCGGCCGCCCAAAGCGGCAAGCGCGTGAAAGGCCGGAAAGGGCCTCAGACGCAGGTCAGAGGCCCTTTCCGGGGCAACGTCCCAGGTGGCGGCGGACGAGTCGGCCTGTACGCCGGGTTCTGACTCACGGCAGTTCGCCTACGGCAGACGTGCACGACTGGAGACCTACGCGGACACCATGCCAACGTACGGGTACAGGCAAAACCGCAGGTCAACGAGAGGATGATCCAGCATCATGGACCGCTAAGCCCGAGATCAGCAGCCGAATCTCAGAACCCCTCAGGCAGCCAGTACACGTGCTACC # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:0, 6:0.25, 7:-0.43, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [126-96] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //