Array 1 83641-84889 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAM01000017.1 Escherichia coli strain A168 NODE_3_length_240095_cov_66.7463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83641 29 100.0 32 ............................. ATATCGATAAAAACGGGGCTGCGGTCGGGTAC 83702 29 100.0 32 ............................. ATCGCTTTATTAATCCAGTACGCCAACGCGAA 83763 29 100.0 32 ............................. GCGTGGAGTAACGGACAACTAAAACAGCCGGA 83824 29 100.0 32 ............................. AGCTCCCCTACTAAAAACCACTGACCTGTAAT 83885 29 100.0 32 ............................. AGTGTGTCCGTTATACGTTGTGCGGACTTCAG 83946 29 100.0 32 ............................. GGCTTTTTTGAGAAAGATTTACGCGGTCGAGT 84007 29 100.0 32 ............................. TGAGCCATTGCCTGGTATTTGGCAATTGTGCG 84068 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 84129 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 84190 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 84251 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 84312 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 84373 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 84434 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 84495 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 84556 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 84617 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 84678 29 93.1 32 .A.C......................... TTCTTGCGGGTGTCGCAAATATTCTTCACGTA 84739 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 84800 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 84861 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110592-111473 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAM01000017.1 Escherichia coli strain A168 NODE_3_length_240095_cov_66.7463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110592 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 110653 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 110714 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 110775 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 110836 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 110897 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 110958 29 96.6 32 .................A........... CAGGATTGAAATACAGCCTCGGCCTGGGACAG 111019 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 111080 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 111141 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 111202 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 111263 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 111323 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 111384 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 111445 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //