Array 1 95259-96999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSWM01000005.1 Dehalococcoides mccartyi strain JNA opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 95259 29 100.0 32 ............................. TAACAGCCCACAGGCGGAGTATACTTGGCATC 95320 29 100.0 33 ............................. TCCAAGCAATCCCCTCAAACATATTTACTTACC 95382 29 100.0 32 ............................. CTTGCTCTTAAACATGTAGGCCCTTTTGCCTG 95443 29 100.0 32 ............................. TGGATACAAATACATACGGATACGCCGGCTGA 95504 29 100.0 32 ............................. CCCGCAAGGCGTTGTATCAAGATGTGGTTATC 95565 29 100.0 32 ............................. TTATCCCTGACTTGCTCATCCATCTGAGCGGC 95626 29 100.0 32 ............................. CGCTGGCACACTGGGCGGTATCATCCAGTAAG 95687 29 100.0 34 ............................. CACAGCCTGTCTATCTCGGCAGCAATAAGTGCGC 95750 29 100.0 33 ............................. TGTCAGTTCCTTGTCTTCTTCAGTTTCACCAGG 95812 29 100.0 32 ............................. GCACCTGTACTGGCGGTACGCAATAGATGCAC 95873 29 100.0 32 ............................. AACGCGGGCCAAGACGGGATATCCTCTACTGC 95934 29 100.0 32 ............................. AAATCAAGGCCAGCGGTGATATGTCCAGAGAC 95995 29 96.6 32 ............................T GGAACTACAGGATGGGTAGCGAAAAGACTAAA 96056 29 100.0 32 ............................. GTGGTTATGAAAAACGCTTCGTTCTGGTGGAA 96117 29 100.0 32 ............................. AGATGACCACCCGTTTATACGCACATCTGTCT 96178 29 100.0 32 ............................. GCCTCTTTGGCTACTCGATGCTTGACTCCTAG 96239 29 100.0 32 ............................. CCCTAGCGATGCGGCATATTTCAAAGAACAAA 96300 29 100.0 32 ............................. TGATGCAATCATAGAACAACTAGCCAGAGAGT 96361 29 100.0 32 ............................. TCCGGCTGGACAGCTGAAAACTGCTGGGTACG 96422 29 100.0 32 ............................. ATATGTGCAGTATCGTTTGACCACTGTAGCAC 96483 29 100.0 32 ............................. GGCTAATATTACTTCAGACCCGATACCCAGAG 96544 29 100.0 32 ............................. ATAATTACTCTGGTGTATCAACTTATGCTGAT 96605 29 100.0 32 ............................. GTAGGTGAGCCAATCGGTCCTGGTACTGTCCC 96666 29 100.0 32 ............................. CCGGCATCGGTCTTTTTCCAACCTAGTTCCGA 96727 29 100.0 32 ............................. TAACCTCCGCCGCCGCCGCCACCGCCTTCTCC 96788 29 100.0 32 ............................. CAGTCATGGCAAATGTACTTCCCTCGGTGTAA 96849 29 100.0 32 ............................. TCATTAAGGCAAATTAGAGGCCTTACTCAAGG 96910 29 100.0 32 ............................. TAGCAGATAGAATACATATGCATGCTACTAGA 96971 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 29 29 99.8 32 GTATTCCCCACGCATGTGGGGGTGAACCG # Left flank : GACTATTCCAGTGGCGTTCAAGGTTGCAGCGGCCAATCCAACCGACCTTGAACGCCAGGTAAGAATTGAATGCCGGGAGGCCTTTTATGAATTCAAACTCCTTGAAAGGCTATTGCCGGATATTGCGGAGGTACTTGGTGTTAGTGATGATATTGGAGAAAGTCCCGACGAGTTTGAGGGGCGCATTGTCACGTTGGCTATTGGAACCGAAGACGGGAGTTTTTCTTGGGAACCCGAGCGCTCGGGTGAGGGATGAACTCTGGGAACGGGCGATAAATAAGACGAAAGAAAGCGGTGCTATCCTCCAGATTTGGACAGACCAGAACTCCCAAGGATTTTCTTCCCGCCAATATGGTGAGAGGGAGCGGACTTTTGTTGATTTTGAAGGGTTATATCTGGTAAAAATAGACAAGAATACCAGCACTATCAAAACGCAAAATTCTGACACTACAAACCCCTAATCAGGAATGACCTGTTTTAAGGTCAGCTTTGTTATTTTA # Right flank : AAAGTTGAGGCATTGACTCAGGCAATATGCTGTGTAGTTTCTGCGTTACCGGCCGGTAAATTGCCAGCTTACCGTGTCATTGCCGGTGGAACAGGATATTGCCCGCCTTTCAGCGCCTTGTAATTGGGATAAGATGATGGAAGTGTACTCAACTCTTGGACTCTATCCTAATGGGCATATAATGGCTAGCTTAAGGCAAAAATTAGGTAAAGGCATTTGTACCAACCGGGGTATAGAAAATCTGAAAGACGGGGATTACTTACTACTGCCGGATTGGTTATCCGCCGCCAGCGCCTCCGCGGAAAGGTAGTATTTATCACCCTTGAAGATGAACTCGGTCATATACACTGCATGGCATTCCCCGACACTTACCGGCAGAATGAGCTTACCTTCAAGCAGACTTTTCTGGTAGCAAGCGGTTATCTTTCCCGAAAAGATGGCGCTTGCAATATCGTGATTCAAAGGGTAGAAGCACTCAGCTTAGAAGCAAAAGTGCCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //