Array 1 28351-28719 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJJV01000024.1 Limosilactobacillus fermentum strain UC3641 contig00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 28351 36 100.0 30 .................................... GTTTTGTTTTGCCAATAGCAACATCGGCCG 28417 36 100.0 30 .................................... AGTTCTCCGAATCCGTCTTCATTCTCCGTT 28483 36 100.0 30 .................................... CCAACAAGTATCATAGGAATAACGCGGCTA 28549 36 100.0 31 .................................... TCCTGTTTTGGCTAGTTCTCAAAACTTATAT 28616 36 100.0 30 .................................... AATTGGAAAGTTGGTTTCGAAGATTCCAGG 28682 36 80.6 0 .........................AG...A.AATG | G,C [28704,28707] ========== ====== ====== ====== ==================================== =============================== ================== 6 36 96.8 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTTGATAAGATGATTGTTAAAAATCTTAGCATTCAGAAGCGAGATCGGATGAATGACCTCGCTCGTGGGGTGTTCTCAGAGATGCAAGATTCTTTGTTTGAATTTGATTTGCCCTTGGAAGTCAGGTATGACGAGAGTCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATTTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCAAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTAGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGATAAAACAACG # Right flank : TTGGTGTAAATTAAATTCCGCGAATTTATCATTTCACAAGCTTAAGCATACCGGCTTCTTCTGAATTGTCATCTTTTTCAATCCCGTGGTAAACGGTCATGTTTAAGTACCGTGGACCAGCAGCCCATTTTTC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 4263-1176 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJJV01000026.1 Limosilactobacillus fermentum strain UC3641 contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 4262 29 96.6 32 ............................C AACTTACGAACATCACGGATGACCCTCGCATT 4201 29 100.0 32 ............................. AAAGATTCTTACTCGAATATGCTAAAAGCTTT 4140 29 100.0 32 ............................. TTAGGAAAGGCGGTGTGGTGAAATGGTATGAA 4079 29 100.0 32 ............................. AACATTTATTTTTAAATCCGGAAATTTACCGG 4018 29 96.6 32 ............................A ATAAACAGCCGCAAGGGTTAACAAAAGTTACA 3957 29 100.0 33 ............................. GGGCGAAACGATCAAATGGATCCTAACGGTGTT 3895 29 100.0 32 ............................. AACGCCCTTGCTTTCCAGGTACTTGTTAAGTT 3834 29 100.0 33 ............................. GGCCGGTTTTATTTGTAGCTCGATTCGATAAAG 3772 29 100.0 32 ............................. ACACCGCGGTTTGTTACGGTATTCGCCATGTT 3711 29 96.6 32 ............................C CATCGTGCCGGGAGTAAGCGTCGTATTTAACT 3650 29 100.0 32 ............................. ACTCGAACGATCGTGCCATACGGTTTGCGTGA 3589 29 100.0 33 ............................. AATCTCGTCTAACTGGTCAATGATTGACTTCCG 3527 29 96.6 32 ............................C ATCCACTTCATGAGTTTGTCGGAGAATTTCGA 3466 29 100.0 32 ............................. ATTCGTGTTCGCTGTAATTATAACACAGCGGG 3405 29 96.6 32 ............................C GATTGAGTCCTCAGCATCTTATCGTTTACGGG 3344 29 96.6 32 ............................C TCGAAAGTCCCAACCATCTGCCATGCTCCACA 3283 29 96.6 32 ............................C TTTGTGCCAAAAAGTGTCGCTGGTCGTAAATA 3222 29 96.6 32 ............................C CAGACTACGAGTACAAGGGTGTGTTAGGACGG 3161 28 93.1 32 .....-......................C AGTTAAAGCTAATTAATCAATACAAAGAGAAT 3101 29 96.6 32 ............................C GGCTCCGCCTTGCTGATAGTCACGATTGGTTC 3040 29 100.0 36 ............................. TAACCCGTTCCCAACGGACATACTCTTTACCATGCG 2975 29 100.0 33 ............................. AATGACTGTTAAGATCAAGTTGTTCAAACCCGA 2913 29 96.6 32 ............................C TAGTGGTGGTTAGTCTTGATATGCTAATCATC 2852 29 100.0 32 ............................. GTACACCGAAGAAAAGGGCGCACAGCGTGGTC 2791 29 100.0 32 ............................. CACGTATGCGATGAACAAGGGGATTGCTAAGA 2730 29 96.6 32 ............................C AAGTGTTCGGTAAAGTGAGTCCTTCGGGTGGA 2669 29 100.0 32 ............................. ATAATCAGTTCCTATTACTGCTCTATAGGTGT 2608 29 96.6 32 ............................C TGGTAAGTCTTGCGTTGTGCTAGTGTCGTCTG 2547 29 100.0 32 ............................. ATGAACCTTTCCCGTACGACAACAATAAAGGC 2486 29 96.6 33 ............................C TAACACGCAAACCAACGGTTGTCGCATTGCGAA 2424 29 96.6 33 ............................C AAGCGAACCACCACAAATCCAATTAGAACCGTG 2362 29 96.6 32 ............................C AATCAAAAACAAGGAAAGGAAACAAGCAAGAA 2301 29 96.6 32 ............................C ACGCCGGGCAACCTATTTAAAAACGGGAAGCC 2240 29 100.0 32 ............................. ATTGCCAAACTGGTCAAGATCTTCATCTTTCT 2179 29 100.0 32 ............................. CAAAACTCATGACAAAGCCCCCCCTAGCGCTA 2118 29 96.6 32 ............................C TACAAGGACATTTATGGTCATACAACTTACAA 2057 29 100.0 32 ............................. CCGTGGTACCTTTACGATTCCGGGTGGGGTAA 1996 29 100.0 32 ............................. ATTAATTTCCGCAATGGGGTTTGGCGGCCTTC 1935 29 100.0 32 ............................. GCTATCGCAATGTATGCACTAGGTTGTAACCA 1874 29 100.0 32 ............................. TAAATCCTAAAAAGTATTTACTTTACTAACCT 1813 29 96.6 32 ............................C TACAAAGCAATACATTGAAATGACGAACGACG 1752 29 100.0 32 ............................. TTAACTGCTTCTTGCCAGTCCTCTAATTCTAA 1691 29 100.0 32 ............................. AACCCGTATCCGTTGCCAACTAAGATTTGGTA 1630 29 100.0 32 ............................. ACACCATCGCCTTTTGGATTTCCATCTGCTTA 1569 29 96.6 32 ............................C AATGGATGCGATCAAAATTTACATTGGGAGTG 1508 29 96.6 32 ............................C AAGTCATTAATGCGGTTCTTGCTAAAGCCCGT 1447 29 100.0 32 ............................. GTTGCCGGGAGTTTATATGACGGTTCGTGAAC 1386 29 100.0 32 ............................. ACATACCCAGTTTATCCAGTTGGCCGGTTTCC 1325 29 89.7 31 .............G.......A......C GACATGTGGAAGAGGCTGATCGCCATCCCCG 1265 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1205 29 79.3 0 ...T.......TC.A........A....C | T [1200] ========== ====== ====== ====== ============================= ==================================== ================== 51 29 97.6 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACAGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAACAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCATGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGTTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGGT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //