Array 1 15206-14851 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JZCU01000011.1 Listeria innocua strain 12KSM Contig15, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
     15205	    29	  82.8	    36	.CACGG.......................	ATCTATAACACTAAAACAGGCAAAAACAGGAAAATC 	
     15140	    29	 100.0	    37	.............................	TCTGTGTAATAGGAAGTACGTTTTGCGACTGGTGCCA	
     15074	    29	  96.6	    37	................C............	TCGTTAAAAGTGTCATGGTTAAGCTTCTGCATTAACA	
     15008	    29	  96.6	    36	.C...........................	TTTGCAATGTAAATCTGATCTGCTTCTGCAGTTAGT 	
     14943	    29	  96.6	    36	..................A..........	AAAGTTACGGCTAAATACATGCCTAAGCTTCTTGTT 	
     14878	    28	  75.9	     0	............CT.CA......A-...G	|                                    	
==========	======	======	======	=============================	=====================================	==================
         6	    29	  91.4	    37	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GGTGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAGCCATCTCCATCGGCCGCATCCTTGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAAGGATAAGTAGAAAACAGTAACTAATAGAGTTGCTGTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACTGAAAACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCGGAGTTTAGAGATATTTCCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGC
# Right flank :  CCCAATATATAATCTTTGCTCACATTTAAAAATTACATTTTCAATTTATATCCATTAAAATATTGCTTTTACCAGCTTTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGTGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGG

# Questionable array : NO	 Score: 3.74
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:81.48%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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