Array 1 114858-115679 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018712.1 Tepiditoga spiralis strain sy52 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 114858 30 100.0 35 .............................. AGATAGAAACGTTGGAGGAAATAATATTGAAACTT 114923 30 100.0 36 .............................. AAAAAAGAATTTGGCTATTATTTAATCCGATTTCAC 114989 30 100.0 36 .............................. CAAAAGTAAAGGTTTTGCAATTAGTGAACAAATTTT 115055 30 100.0 36 .............................. TCTTAAAGCGTCTATCCAATGATTATTTTTGTCCTC 115121 30 100.0 36 .............................. AAAGATACTTTACATGACAATGAATTAAAATTATTG 115187 30 100.0 35 .............................. TCAGATGCACCATTTATTTTAATATGAAATATTTT 115252 30 100.0 36 .............................. AAATCCAGCTTCTTTTAAATCATTATATAATTTTAA 115318 30 100.0 37 .............................. TTTTGGCAGATAAACCAGCAATTATGAAAATAACTAC 115385 30 100.0 36 .............................. GAATTAGACCAAGTTTTACCTGGAAATATTGTTGAT 115451 30 100.0 37 .............................. TAATGAATGAAGACTATTTACATGTAGAAATGTATTT 115518 30 100.0 36 .............................. GAAGAACTTCAAATGTATTTCACAATACCCCAGCAG 115584 30 100.0 36 .............................. TTGCTCTATTGCTCTGTTTAATGCTTTTTTATCTGA 115650 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 100.0 36 ATTTATATTCCAATATGGTTTGATTATTAT # Left flank : TTTCTGGTCCAAAACTTGGAAAAGATAAAGAGTATTTATTTTCAAATAATGCTGCAGCAGAACCTAAAAGTCTTGCAGCAGTAAAACTACCTTGTCCACCTCTTCCGTGCCACCTTACTTCAATCATAATCTTTACCTCCCGATACATTATTTTTATTTTCATATGATATATATGTGATATATCACTAATATATTTAAAATATATCATAATTTTATTTATATAAATAATCCAAAAAAATTTAAATAAAAGAAATTATAAACGGTAAGATTAAATATTTAGTGATTAAAGTAAAAAATTATATAATTAAAAGCAAGAAAGATTTTAATTGAAAAGAACAAGATTATATATAGAGAAGATAAGTAATATTTTTAGAAGTAGTATACGATTATGATTTTGATAAAACAAAATATAAAAAATAAAAAGACACTCTAAGAATGCCTTTTTTGTATAATTTTTCTATAAAAAATCTATTAACGAACAGAAAATTTATATTCCAAAA # Right flank : TACGTAATTTTAAAATTTATATTATATCTTAATTATAACTTGCTTATCTGTTGATTTATTCAAAATCCAATGTTTTATTTATTAATAAAATTTACATAAGAACATTTTTTATAGTATTAGCTATTTTTAGAATCTGTCTATTACAGGTGTTTATTTGCTTAGTTAAGTTCAACAGATTTTTTAAATAAAATTATCTTCCTCTACTTTTCCCAAATATTTTCCTATACCTTTTTCTTTACTATAGTCATAATTTAATATATATAACTTTTTATATTTATTTATTTCAATATTTTCTACTAAATTTAATTTTATATTATTTGATTTAATCATATATGATGGTATATTAACTGAATATTTTTTTATATCTTCAATCAAATTATTAATCTCTATAAACCTTTTTTTATTTTCATAATCTTTCTTTAAATTTGTTATTTTGCTATATTTTTCTTCTATTATATCACTATATTTATTATATATAGTTTTTGGAATAATTGTACAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATATTCCAATATGGTTTGATTATTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 620008-621111 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018712.1 Tepiditoga spiralis strain sy52 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================================== ================== 620008 30 100.0 40 .............................. GTGAAAGAAAAACATATAACAGAAGAGAAATACCAAGTTC 620078 30 100.0 36 .............................. TCAACAAATTTATAGGAAGTGATTTAATAGTTAGAA 620144 30 100.0 38 .............................. CTAATAAATTGTATTTTATCATTTACATTCAGTTCTTT 620212 30 100.0 35 .............................. TACTTAAGACAATAAATTATACTTAAAATTAAATA 620277 30 100.0 38 .............................. CTGGTGTTTCAATGAAAAGTGGATCTTCTTCTAATTCG 620345 30 100.0 37 .............................. GATGAAACAGAATTTAAAAATTTATTAGATGTAGTGG 620412 30 100.0 36 .............................. CGTCATCGCTTTCTAAAAATGTTTTCATTACTGATA 620478 30 100.0 37 .............................. AGTATAAAATGGCTCTATGGGCTTAATTTAAGCTTAA 620545 30 100.0 37 .............................. AATGGGATGGAAAAGGTAACTGTTATCTCTATGACTA 620612 30 100.0 239 .............................. GGAGAAAAGTTGATTTCTTTACTTATAGTGATATTATAGTTCTTATTCTACCATTTACTTGTACCGAGCGAAATGGTTTTTCGCTCATAAGGAATTGAAACCTTCATCTATAACTTGTTCGTCTTCTAATAAAAATTTTCGTTCATATTCTACCATTTACTTGTACCGAGCGAAATGGTTTTTCGCTCATAAGGAATTGAAACTAATCATTTAATACAAAACGAAAAGAATGAAAACGT 620881 30 100.0 37 .............................. GATACAAATATATTAAAAGATTTCTTTATAGATTTGT 620948 30 100.0 38 .............................. TTAAATAATATACATGATTCATTAAATAAATCATTCTG 621016 30 100.0 36 .............................. TACTAAAGACCAAATTAAAAAGGTTTTGCCTACAGC 621082 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================================== ================== 14 30 100.0 53 GTTCTTATTCTACCTATGAGGAATTGAAAC # Left flank : ATTAATTTTAAAACAATTGCTTGAAGTATATGATTGTAATTAATAGGTATTTCTAATGTATCAAAAGAAAATTTTATATTTAATCTCAATTTACTTCCTCCTTGTTTTTCTCTAACATTAATTTTAACTCAAAGTAACTTTAAAAGTCAAGTGCATATTTAAATTTATATTTATACATAAAAATTTAATATTTTTATATCAAAAAAACATTATTACTTTACATTTAATAAATCAAATGATAAATTAATACTTAAAAAATAAGAAGAAGATATAAAATAAAAAATTGAAATTATCGTCAACCACCAATGTGTCTATAAACACCTGGGGTCGACGATTTCATAAACAGGCATAAATAAAAGAAAGTTACTGTTTTTTAATGTTTTAGATATAATTTGACAACATATATCTTTTGTAGTATAATTTTATTGCCTATTAATTGAAATTATTTTATAATAATAGTTTTATGCAACACCTATATGAAAAAATATTTTTATTAATGG # Right flank : CCTATTATAAATACTTGATAATTCCCTCAAAGTATTTATGTTCTTATTCTACCATTTACTTGTACCGAGCGAAATGGTTTTTCGCTCATAAGGAATTGAAACCTTCATCTATAACTTGTTCGTCTTCTAATAAAAATTTTCGTTCATATTCTACCATTTACTTGTACCGAGCGAAATGGTTTTTCGCTCATAAGGAATTGAAACGGATGATCCATATTGGTACGAAAAATAGATTTCCAAGTTCATATTCTACCATTTACTTGTACCGAGCGGGATGGTTTTTCGCTCATAAGGAATTGAAACCTTCATCTATAACTTGTTCGTCTTCTAATAAAAATTTTCGTTCATATTCTACCATTTACTTAGTACCGAGCGGGATGCTTTTCCGCTCTTGAGGAATTGAAACTCTTCTAATTCATCTTGAATATTGAATTGATATAAAGGTTCATATTCTACCATTTACTTGTACCGAGCGAAATGGTTTTTCGCTCATGAGGAAT # Questionable array : NO Score: 7.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-1.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTATTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 798413-795319 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018712.1 Tepiditoga spiralis strain sy52 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 798412 30 100.0 37 .............................. TCGAATACTAAATAATAAATAGCATTATTATCTTTTT 798345 30 100.0 37 .............................. GTTATTAGCAGAACTAAACTGCTTATCATCCATACTA 798278 30 100.0 40 .............................. TCTTTTCGTAACTATTCATTTCAAGCATGTTCTATAAATA 798208 30 100.0 36 .............................. CATTTCACTTTTATTAAGTATTTGTTACTGGTTATT 798142 30 100.0 40 .............................. TTCGAAAATCTTTTTTTTATTTTCTTCTTTTGAAATAATT 798072 30 100.0 37 .............................. TAAAATCGCTGTATGAGGCTATAAAGGGCTTAGAATT 798005 30 100.0 38 .............................. AGGAACTGCACCTCTTGGAGCAATTCTTGGTGGAACAA 797937 30 100.0 38 .............................. TTAAAATTTTCAAAATTTATATATGAAAATTCTACATC 797869 30 100.0 37 .............................. AAAAACTTTTAAAGGTGGATGATTTAAATGTATAAAG 797802 30 100.0 36 .............................. TTTTCTCCTCTATATTTTTAATTATAACATGTTTTG 797736 30 100.0 38 .............................. ATGCGGTACTATCTTTCATTTCAATTGCTTTTAAATTC 797668 30 100.0 37 .............................. TGATTACTTAGTGAATTAACTTTGTTGTTAAATACTT 797601 30 100.0 40 .............................. CATTGGATTGTAAAATAAATCTTCTGCTACATGTTCTAAT 797531 30 100.0 39 .............................. CATTTTGATGACTGAAGAAACATCCCAATTTCCGATTGG 797462 30 100.0 37 .............................. TCCTTTATGAATATTTATCATTAATGTATCCATTTTT 797395 30 100.0 39 .............................. TAACTATTTTGGAGATTAGCAACTATCTTATTAGCAATA 797326 30 100.0 38 .............................. TGGGAAGTATTTAATAGATGCAGTTGAAATCTTCCCAT 797258 30 100.0 38 .............................. CAAAATTTGATGTACCAATACAAATTAATTTTGAATGG 797190 30 100.0 37 .............................. TCTCTTTTTTGTAATTGTTCTTCTAAGTGTACTTTTG 797123 30 100.0 38 .............................. TATACCAATAAGAGAATCATCAACTTTAAACATTTTTT 797055 30 100.0 37 .............................. TAAAATGAATTTTGTTGTCATGCATTCCATTTCTTTG 796988 30 100.0 40 .............................. TTTTTAAATTTTTTTATAGTGCTTGTCAAAATGTATGCAC 796918 30 100.0 39 .............................. TTAATAAATAACGGTATAATAAAAACAAGGTTGGAAATT 796849 30 100.0 39 .............................. TTCTCTATTTTAAAAGTAACTATCGTATAACTTTTTTTT 796780 30 100.0 37 .............................. TTATAAACCCTTTGCATTCGTGTAAATGTGTTTCTGT 796713 30 100.0 37 .............................. TTTGCTTTGGCAAGAGCGTATGTTCCTAGGAACACAA 796646 30 100.0 37 .............................. TCAATATCAAAGTAAGTTTGAGCACTATTTATAATTT 796579 30 100.0 40 .............................. AAACTTCTTCTGGAATTTGTTGATGAGACCAGAAAATATC 796509 30 100.0 37 .............................. AATATATGTATTGGAAAAGTACTATAAATTTAAATTT 796442 30 100.0 36 .............................. TTTTAATAAAGCTACCATATCAAGTATTTCCTTTTT 796376 30 100.0 40 .............................. TTTGCAAACATAAAACTCATATATTCAACTTTACTAACAT 796306 30 100.0 39 .............................. TTTGCCCAAGCTTGGGCATAACGGCTATTGCCGTTATAC 796237 30 100.0 36 .............................. TTTTTAAAATTTTTTATAACTGCAGAGGATATTATT 796171 30 100.0 40 .............................. TTTTTTAGCCTCCTTTTTTTTATCTTCCTCATCTAAGAGA 796101 30 100.0 39 .............................. ACTCTTCCATGGTTTCAGCATTTGCCGTATATTCGCTAC 796032 30 100.0 39 .............................. TAATAATCTCCGGCTCCAAAATAATTTCCGTTGCAGTAA 795963 30 100.0 39 .............................. ATTATTTAACATGTTGTAAGGTAACTTTTTCAATGTTTC 795894 30 100.0 38 .............................. AAAATATTTTGTTGTTTGTTTATTTAGAGTAAAATTTT 795826 30 100.0 39 .............................. TTGGGGAAATATTCCCCCGTTTCCAAACGTAGTACTCAA 795757 30 100.0 36 .............................. TAAGGTGTAATTGCCTTACCTCTTAATGTAGATACA 795691 30 100.0 36 .............................. TTGTGCGTTTTGCATAATTTGTTGTTTTTCAACTTC 795625 30 100.0 40 .............................. TTCAGTAACCCCTAATTGGTTTGCTGACACGTTTATATTA 795555 30 100.0 39 .............................. TCATATTTACTACTACGTTTTAATAAAGCTACCATATCA 795486 30 100.0 40 .............................. CTCCTGTTGTCATTTTAAACTCTGCGTCTTTTGTTAGATT 795416 30 100.0 38 .............................. AAAATATTTTGTTGTTTGTTTATTTAGAGTAAAATTTT 795348 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================== ================== 46 30 99.9 38 GTCCTTATCTATCCTTAGAGGGTTAAAAAC # Left flank : ATTTATTTATATCCTTCCAAAACTTTTGGAAGGATATTTATTATAAAAAGTATGATATAATTGTTATGAATATGTATAAAATATTCAAGGGGTATATACTCATAAAATTACAAATTTATTAAGTAACAAAAAAATAGAATTTTTATTCTATTGTTGATTTTTATATTTTATTATAAATAAATTTTAAAATAAAGATAACTTAAAATCTTAAAACCTGATTTTTACTGTTTTTTTGAATTTTAAATAAGTTCTAAAAAAAGAACAAATTTATGTAAACTTTTTATTTTTCCAAAAACAAATATTACAATTGTAAAAAATATTACATTTTAGTAAAACCATGTAATACCTAAAAACACTGTGTTATAGAAGTAAAAAAAAGCAAAAAGATTTTTTTGTAATATTAAGTTTCTTTTTTGTAATAAAAAAATGTAGTATTATTTGACACCAAAAATTTGGTGTGTTATAATTTTAATGCATATTTTAAAAGAAATATAGTTACT # Right flank : TCATTTTTTATTTTTGGTAAAATTTCTTCTCTAAAAAAACTTTCTTAAAATAAAAAAAGGGAATGATAACTTATGAATTTAAAAGATGTTGTTATAGTTTTAGAATTGTTATTTGCTGTGTGGTTAACAATTCATTTTAACTTAAATATTTTTACGTTTATTTTTTTATTGTGTTTTTTATATTACTTCACTTTACCTGTTTTATTTATTTTTTTAGTTTTGTTTTTTGCAATATTTTTTTAAAATGGTTAACACTTTTTTTGTGAAAAAAATATATATAGAATATTCTTTTATTAGAGATTATGATATAATAAAATGAATAAAGATTAGAGGTGATAAAGATGAAAAAACTACCAATAGGAGTACAAGACTTTAAAGAATTAATAACAGATTATATATACATAGATAAAACAAAATATTTATATGAATTAATAACAAGTGGAAAATTTTATTTTTTATCTCGACCAAGAAGATTTGGAAAGAGTTTAACGATATCAACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTTATCTATCCTTAGAGGGTTAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 2017906-2018994 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018712.1 Tepiditoga spiralis strain sy52 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2017906 36 100.0 39 .................................... GTGCAGGACTTACAAATCCTACAACATCGTAACCAGCTG 2017981 36 100.0 40 .................................... ACCAATTCGCTCTCATCCATTACTTCTGCTATGACTTCAA 2018057 36 100.0 40 .................................... AAGTTCTCCAACCTTACTGTAAATTTTCAATTCTTCACGT 2018133 36 100.0 40 .................................... AAGCTAAGAACCTTTATCAATTTAACTATTTCTTCATTAC 2018209 36 100.0 39 .................................... TTTAGTGCCATTTTTATGGCACTTAAAACTTCGTAACTC 2018284 36 100.0 39 .................................... TCTTTGCTAAGCTAAGAATCTTAATTAGCTTAACAACTT 2018359 36 100.0 39 .................................... GTGAATTTCCCACCAGATTCCTTAGGATGGATAGAAATT 2018434 36 100.0 39 .................................... GTGTCATCTCTATAATCATAGAGATAACAATTTTTCCTT 2018509 36 100.0 38 .................................... TTTTTTACTTTTTTCTACTTGTTTCATTGCTATAGTGG 2018583 36 100.0 39 .................................... ATATATCCTTCGCCACTTACTTCATAACTTACTATATAT 2018658 36 100.0 39 .................................... AAAATCACCTATAACTTTTTCAGCTGCGTTTCCTAATAC 2018733 36 100.0 39 .................................... ACGATATAGCATATTCACTACTATATGCATCATCATCAT 2018808 36 97.2 40 ...........T........................ ATATTAAGAACCCTTACTAATTTAATTAATTCAGCTTCAT 2018884 36 100.0 39 .................................... ACATTTGCTTTTGTTTCTAACTCTTTCTTAAAAATTTTG 2018959 36 97.2 0 ...........T........................ | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 99.6 39 GTCTGAATGCTACTCTTCCCTGTAAGGGATAATAAC # Left flank : ATTTGATGAAGATGTAATAAAAATAAAAGATTAATAATATTAAACAAATAATTCTTTCAAATGAAAAAATTATTTGTTTAATATTTATATAAATAATTGTTTTTTTCACATTATTTTTTTCACTCTGATTAATAATTTATTATTTTTAAATAAACACATAATAGAAAAACAAGCAAATAAAAATCCTGTTATATACATTCTCACTAAATAACTCCTTTAAATTATAAAAAAGTTATTTTTTTATTAAAAAAACAAAAAAAACACTTGCAAAATAAAAATAAATGTGTTATAATAAACATGAATGTAAAGTTTCCGGAACATTGGCAAAAATAAAAAATCGCATAAATAAAGGGTTTGAGCAAAATAGGTTTGGAACTAAGTAATAATAAGCATTACAGACGAAATGGTGGTAGAAAATGAAGATAAGAAAAATATCACAAAGAGAGTTTGGAAAATACGGCATTGAAATCCACTAATAAATAGGCATTCAAATGTTAGCA # Right flank : CTTGAAAAAAATAAAGATGCATTTTCAATGAAAATGCATCTTTATTTTTTATTCAGAAAATGATGCTATATCTTTAACTTCACAACATTTTAATGTATCTAAAGATTTTATTCATTCTATAATGAATAATAAATTTTAAAAATTATTTTGTAAATTCCAATATGTACTAACTATTTCTTTTTTATACTTAAAAAATGTTTTTTTATTTTAAAGTAGATTTGATATAATAACATGTAAGGATATAAAACGAGGTGATAAAAATGAAAAAAAGACTTCCAATAGGAAGAAGTGACTTTAAATCATTAATAGATGACAATATGTATTTTGTAGATAAAAGTATGTTAATCAAAGAAATTATTGAAAGTGGAGACGTTCTATTAATAACAAGACCAAGAAGGTTTGGTAAAACTCTCAGTCAATCTATGATGAAATACTTTTTTGATATTACTCAAAACAACGAATACATCTTTAAAAACTTAAAGATATACAAAGAAAAAAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATGCTACTCTTCCCTGTAAGGGATAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 5 2028600-2029919 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018712.1 Tepiditoga spiralis strain sy52 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2028600 36 100.0 39 .................................... CTATGACTTCTAACTTGAAGCCATAGAGAAGCTTTGAAA 2028675 36 100.0 40 .................................... AAGCTAAGAACCTTAATTACCTTAATAAGTTCTTCTCTAG 2028751 36 100.0 40 .................................... ATAATTAATAACTCGTGTCAAATGTTTATTTTGTATCAAA 2028827 36 100.0 40 .................................... AATTATTCAACGGATATAGAATATCCGTTTTTCAGTGCCA 2028903 36 100.0 40 .................................... GGGTTCTTTGACATATTAAGAACCCTAATAAGTTTTACCA 2028979 36 100.0 40 .................................... TGGTCACTTATAAAGATCCCAACTATTCTATTTCTATTTT 2029055 36 100.0 40 .................................... ATAATTAATAACTCGTGTCAAATGTTTATTTTGTATCAAA 2029131 36 100.0 40 .................................... TGATTTCTTATTTTACTCTTATAATTACTACTGTTGTAAT 2029207 36 100.0 38 .................................... CCATCATTTTCTAAGTACATTTTTTCATTTTCCATTAC 2029281 36 100.0 39 .................................... TGATAAGGATTCTTTGACATATTAAGAACCCTTATCAAT 2029356 36 100.0 39 .................................... TTTAACAAGCCGGGCAATTATTTTAAAATATATCTTCTA 2029431 36 100.0 39 .................................... TTTACTCATTCTTTCTCACTCTCCTTTAGTATTTTTTAA 2029506 36 100.0 40 .................................... TTTAGATGATGGCTTTTTCGTATATGGATTTTTAGCTAAG 2029582 36 100.0 40 .................................... ACTAAACCGTCCGTGTCGCGAAAGACACGGACGGTTTGAT 2029658 36 97.2 39 ......................C............. TTGAAGCCATAGAGAAGCTTGGATAAAGCTATTTTTAGA 2029733 36 97.2 39 ......................C............. TTACCATCTTTTTCTAAATATATTCTTTCACTTCTTATT 2029808 36 100.0 40 .................................... TGCTAATGTTTTTATCAAACGTAAAAACATTAGCCAATAC 2029884 36 91.7 0 ................................GC.T | ========== ====== ====== ====== ==================================== ======================================== ================== 18 36 99.2 40 GTCTGAATGCTACTCTTCCCTGAAAGGGATAATAAC # Left flank : TAATTATTTTGGTATAAATTTTCCATTGGACAAATGTAAAGATTGTAATTACATAAATAAAATAGATAAAAGTTGTCCCAAATGTGGAAGTACTAATATTATAAAATTAAGAAGAGTTTCTGGATATTTATCTGAAGAAAATAAATTTGCTTCTGGAAAGAAAAAAGAATTAAAAAATAGAAAAAATCATTCTTTATAAAAATCTAAGTAACTCTTTTAATTATAAAAGAGTTACTTTTTTTATTAAAAAAAGATAAAAAACACTTGCAAAATAAAAACGAATGTGTTATAATAAACACGAACGTAAAGTTTCCGGAACATTGGCAAAAACAAAAAATCGCATAAATAAAGGGTTTGAGCAAAACAGGTTTGGAATCAAGTAATAATAAGCATTACAGACGAAACGGTGGCAGAAAATGAAGATAATAAAAATATCACAAAGAGGGTTTGGAAAATACGGTATTGAAAGGCACTAATAAATAGGCATTCAAATGCTAGCA # Right flank : TTTTCTTCAACAACTTTATGGAATTTTATTTTTTTATTCTTTTCTTTTTCTTACGATCATTGATCCTTTCAAAATTCTTTTATTCTTCTTTTCTAAATTTATCCTTTAATCTTTTTTATAAAATATTTTTAATATACTAAATAAAAGAAAGATAAATCTTTATTTAGTATATTAATGTCGAATAACAATATGGATAGTACATAAATAAAAAGTGAGGTGAGAAAATGACTTCAGGTTGGAAAAAATGTCCTAATTGTGGGGAAGAAGTACGAGATTATAACAGAAAATGCTTTAATTGTGGATGGATTTTTTATAAAAAAAAATGTCCTAGATGTGGAAAATATATGGATGATAGTACAAAAGAATGTCCTAGATGTGGATGGTATTTTTATTGGAATGAATATATCGGAGAAGATGATGGTTGTTATGAAAATTATGAAGATGATAATGATTACGAAGAAAATTATGAAAATGATTGGGATTTTTTAACTGATTTAGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATGCTACTCTTCCCTGAAAGGGATAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 6 2044008-2042619 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018712.1 Tepiditoga spiralis strain sy52 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2044007 36 100.0 40 .................................... TATTCAGTAGAATTATGAGAAGTTTAAATGATAGTTACGT 2043931 36 100.0 40 .................................... CGGACGGTATGTTTCAAATCGGACGTTCGGAAACGAACGT 2043855 36 100.0 40 .................................... TTATCAAAATAGCATTAAGTAAATTATTATACGGATTCAA 2043779 36 100.0 39 .................................... AAATTGATAAAGGTTCTTAGCTTAGCTAAGAAACCTTAT 2043704 36 100.0 40 .................................... AAATCATTAAATTGATAAAGATTCTTAGCATTGCTAAGAA 2043628 36 100.0 38 .................................... AATGGGTCTCTTTGTTTAGGGTCCCCGAAGAAGGGGAC 2043554 36 100.0 40 .................................... GAGGTGAAACCATGACAATTTATATCTCAAAGAGATCCAA 2043478 36 100.0 37 .................................... TAGAAGTCATATTAGAAGTTATGGATGAGAAAGAAAT 2043405 36 100.0 38 .................................... TAATGGATGAATCCGAATTGGTAAAGTTAATAAGGGTT 2043331 36 100.0 39 .................................... CTGCAAAAGCTGATAACATAAATATGTTTATTGGCTTTG 2043256 36 100.0 39 .................................... TCTTAAGTTAGCTCTATCCAAACTTCTATATGGCTTCAA 2043181 36 100.0 39 .................................... AACAAAGTTAATAAGAGTTCTTAGCTTAGCTAAGAACCC 2043106 36 100.0 40 .................................... TTTTAAAAATAGCTCTATCCAAACTTCTATATGGCTTCAA 2043030 36 100.0 40 .................................... TTTAGAAGCTATATTAGAAGTTATGGATGAGGGTGAATTA 2042954 36 100.0 37 .................................... TTAGAAGTCATAGTGGAAGCTTTGAAAGAAGAAGAGT 2042881 36 100.0 39 .................................... AGAAATGTTAAATCAACAATATGGTTCAGAATTAAAGGT 2042806 36 100.0 41 .................................... CATATGGTAATCTATATTTCCAAGAGATCCCAAGGGTTACA 2042729 36 100.0 39 .................................... AATAACTAAGTTAATTAAGGTTCTTAGCTTAGCTAAGAA 2042654 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 19 36 100.0 39 GTTATTATCCCTTTCAGGGAAGAGTAGCATTCAGAC # Left flank : CACTTCTTCCTATTGGAAGTCTTTTTTTCATTTTTATCACCTCGTTTTATATCCTTACATGTTATTATATCAAATCTACTTTAAAATAAAAAAACATTTTTTGAGTATAAAAAAAAATAGTTAGTACATATTGGGATTTACAAAATAATTTTTAAAATTTATTATTCATTATAGAACGAATAAAATCTTCAGATACATTAAAATGTTGTGAAGTTAAAGATATAACATCATTTTCTGGATAAAAAATTAATAAAATTTTAATAAATTTAATAATAAGATCGATAAGTAAATCCATATGAATTACCTCCTTTGTTTTTTTAATGTTTTTATATATACTATAAATTATTTTTTATAAATCAATATAATTTTATAGTTTTCTAAATTAATATTCGACATTAGTCAAACAAATAAAAAATAAAGATGCATTTGCATCTTTATTTTTTAAAGTTTATTTTATAAATGATCATACATATTTTTATTTTTTCAATGGAACAAATGCA # Right flank : TGCTAGCATTTGAATGCCTATTTATTAGTGGATTTCAATGCCGTATTTTCCAAACCCTCTTTGTGATATTTTTCTTATCTTCATTTTCTACCACCATTTCGTCTGTAATGCCTATTATTACTTAGTTCCAAACCTGTTTTGCTCAAATCCTTTATTTATGCGATTTTTTATTTTTACCAATGTTCCGGAAACTTTACGTTCATGTTTATTATAACACATTTGTTTTTGTTTTGCAAGTATCTTTTATCTTTTTTAAATAAAAAAAGCAACTCTTTCATAATTTGAAAGAGTTGCACAGCTTTTTATAAAATTTTTTATTCAAAGTAAGGTATATAAAGTTTCCATTCTAAATCATTTAAAGCTACTTTGTTTGTTATATGTATTGGATAGGGAAGTTTTATATTTGAATATGGTGTTGAATAGTAAAGTTTAGAGAGCATAAATCCTTGAAAAGCTATTTTTTCATTTTCTATTTTAACATTATTATATATAATTTTTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTATCCCTTTCAGGGAAGAGTAGCATTCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 2066244-2067177 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018712.1 Tepiditoga spiralis strain sy52 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2066244 36 100.0 38 .................................... TTTTCACCTTCATTCATTGCTTCTACTATGACTTCTAA 2066318 36 100.0 39 .................................... TTGGATCTCTTCGAGATATATATTACCATGTTTTCACCT 2066393 36 100.0 32 .................................... GGGTTCTTTGACATATTAAGAACCCTAATAAG 2066461 36 100.0 40 .................................... ATCCAACCATTTCTGTCTATTGTTATTTCTTTTTCATCTA 2066537 36 100.0 39 .................................... GGGTTCTTTGACATATTAAGAACCCTTACCAATTTTACT 2066612 36 100.0 38 .................................... CATTAATGCTATAGCATTTACAAGTAGATCGATTACTC 2066686 36 100.0 40 .................................... AAGTTTGGATAGAGCTATTTTTAAAATTTCTTTATCCATT 2066762 36 100.0 41 .................................... TGCATCTGCTTCCATTTCTTCTACTACTTCTTTCATTTCAT 2066839 36 100.0 40 .................................... ACTTCATGTTCATCCATAACTTCTGCTATGACTTCTAAAT 2066915 36 100.0 39 .................................... TTAGTAATAAGTTTGTTGCTATGAAAGTTAGTACTCCAG 2066990 36 100.0 40 .................................... GCCATAACGCCAACAACAACTAAACTACCAACAATAACAG 2067066 36 100.0 40 .................................... AAAACATTATCAGCTGGTGTTAATGTTCTTACTAATTCTT 2067142 36 91.7 0 ................................GC.T | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 99.4 39 GTCTGAAAGATACTCTTCCCTGAAAGGGATAATAAC # Left flank : AAAATAAAAATACCATCATTAAGAGAAAGAAAAGAAGATATAAGATTTTTAATAAATTTTATACTATTAAATCCATTCATTAATAAATATGATAAAGAAAATAAAATTTATAAAGTAGATAAAATCTCGCTAGAAGCCATTGAAAAACTAGAAAATTATGACTATCCAGGAAACTTTAGAGAACTAGAAAGTATATTAAGAGAAGCCTTGAATATTGCATATTTTGAAAAACAAGATATAATCTTACCAAAACATATAAATATATAAACAAATAAAAATAAATGTGTTATAATAAACACGAATGTAAAGTTTCCGGAACATTGGCAAAAATAAAAAATCGCATAAATAAAGGATTTGAGCAAAACAGGTTTGGAACTAAGTAATAATAGGTATTACAGACGAAATGGTGGTAGAAAATGAAGATAAGAAAAATATCACAAAGAGGGTTTGGAAAATACGGTATTGAAAGGTACTAATAAATAGGCATTCAAATGCTAGCA # Right flank : TTTTCTTCAACAACTTTATGGAATTTTATTTTTTTATTCTTTTCTTTTTCTTACGATCATTGATCCTTTCAAAATTCTTTTATTCTTCTTTTCTAAATTTATCCTTTAATCTTTTTTATAAAATATTTTTAATATACTAAATAAAAGAAAGATAAATCTTTATTTAGTATATTAATGTCGAATAACAATATGGATAGTACATAAATAAAAAGTGAGGTGAGAAAATGACTTCAGGTTGGAAAAAATGTCCTAATTGTGGGGAAGAAGTACGAGATTATAACAGAAAATGCTTTAATTGTGGATGGATTTTTTATAAAAAAAAATGTCCTAGATGTGGAAAATATATGGATGATAGTACAAAAGAATGTCCTAAATGTGGATGGTATTTTTATTGGAATGAATATATCGGAGAAGATGATGGTTGTTATGAAAATTATGAAGATGATAATGATTACGAAGAAAATTATGAAAATGATTGGGATTTTTTAACTGATTTAGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAGATACTCTTCCCTGAAAGGGATAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 8 2073521-2074982 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018712.1 Tepiditoga spiralis strain sy52 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2073521 36 100.0 39 .................................... TTTTCTGTTTGAACTAAAATTAAAACCATATTTTTTGTT 2073596 36 100.0 38 .................................... TTAGCTAAGCTAAGAACCTTAATTAGCTTAATCAATTC 2073670 36 100.0 39 .................................... GTATAATTGGCAACCTCCATGTCATTTACTTTGGGTAGA 2073745 36 100.0 40 .................................... TACTTGCCCCTTATCTCATTGTTGTCCAACCATTTCTGTC 2073821 36 100.0 39 .................................... ACCCTTATTAACTTAGTTACTTCATGTTCATCCATAACT 2073896 36 100.0 40 .................................... TACTTGCCCCTTATCTCATTGTTGTCCAACCATTTCTGTC 2073972 36 100.0 39 .................................... ACCCTTATTAACTTAGTTACTTCATGTTCATCCATAACT 2074047 36 100.0 40 .................................... ACTATTCTACTCTTTTTTTCTGGAAGAAATATATCTCTAT 2074123 36 100.0 39 .................................... TAGATATGAAACATTTCTAAGTGATTGAATTTGAATCCT 2074198 36 100.0 41 .................................... CTGGGTCAATGAAACTAACTAGACCCAAAAAACTTCCAGAT 2074275 36 100.0 38 .................................... TTTTTCTTCATCATAATATCTATTAACATATTATAGTC 2074349 36 100.0 39 .................................... ATCTTCCTCCCAAAATAAATCATAAATTTCTTCTCTAAT 2074424 36 100.0 39 .................................... TAATTTGAGAACAAGCCTTTCGGGCTTGCTCGAAAATAT 2074499 36 100.0 39 .................................... TTGCTATCTTAATTTTATTTGTAAGTTCTTCAGATAATT 2074574 36 100.0 39 .................................... ATAAATAATTAAAATGTATACTTTGTCGAATAGTTCGAA 2074649 36 100.0 38 .................................... TGTATACATATCCTTCATTTACTTTAATTACAAACTTT 2074723 36 100.0 39 .................................... TTCAAATGTTTCACTGAAATACATATAACCATCAATAGC 2074798 36 100.0 39 .................................... TAATTTGAGAACAAGCCTTTCGGGCTTGCTCGAAAATAT 2074873 36 100.0 38 .................................... ACTTACATAAACTTTATTATCTATTATTCTCATACCTT 2074947 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 100.0 39 GTCTGAATGCTACTCTTCCCTGAAAGGGATAATAAC # Left flank : GAATTAATAATACTACAATAAAAAAAACTAATAATAATAATAATAATTATAATAAATCATTCGAAAAAAAACCAACAATAGTAAAATCAATGTCAATAAAAGACAAAAATAAAAATAATCTCATTATCAAAAAAAATAACAAGAATACTTTACAAACAAATTCAAATACACACATCATAAGTTATACAAAATTATAAAAAATAATTAATTAAAAATATCTCTTTCGTTGAAAGAGATATTTTTATTAAAAAAACAAAAAAACACTTGCAAAATAAAAATAAATGTGTTATAATAAACATGAATGTAAAGTTTCCGGAACATTGGCAAAAATAAAAAATCGCATAAATAAAGGGTTTGAGCAAAATAGGTTTGGAACTAAGTAATAATAAGCATTACAGACGAAATGGTGGTAGAAAATGAAGATAAGAAAAATATCACAAAGAGGGTTTGGAAAATACGGTATTGAAAGGTACTAATAAATAGGCATTCAAATGCTAGCA # Right flank : CGTGCCCTTCGACAAGCTCAGGAAACGTTTATTTTTTTTTTAATACTTCTACTTTTCTTACGGTCATTGAGCTTGTCGAAATGTGGTCATTGAGCTTGTCGAAATGTGGTCATTGAACATATCAAAATGACCTTTTTTTTATTTTAAAGAAGATTTGATATAATAACATGTAAGGATATAAAAAGAGGTGATAAAAATGAAAAAAAGGCTTCCAATAGGAAGAAGTGACTTCAAATCTTTAATTGAAGATAATATGTATTTTGTAGATAAAAGCTTGTTAATAAAAGAAGTTATTGAAAGTGGCGATGTTTTATTAATAACAAGGCCAAGAAGGTTTGGGAAAACTCTCAGTCAATCTATGATGAAGTACTTTTTTGATATTACTCAAAATAACGAACACCTCTTTAAAGCTTTAAAAATATATAAAGAAAAGAACATAATAGAAAAACATTTAAATAAACATCCTGTTATATACATCACCTTTAAAGATTTAAAGTCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATGCTACTCTTCCCTGAAAGGGATAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //