Array 1 5555-7047 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUQ01000092.1 Salmonella enterica isolate STY155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5555 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5616 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5677 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5738 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5799 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5860 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5921 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5982 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6043 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6104 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6165 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6226 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6287 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6348 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6409 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6470 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6532 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6593 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6654 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6715 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6776 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6837 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6898 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6959 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7020 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65466-63501 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUQ01000020.1 Salmonella enterica isolate STY155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65465 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65404 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65343 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65282 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65221 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65160 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65099 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 65037 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64976 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64915 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64854 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64793 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64732 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64671 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64610 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64549 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64488 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64427 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64366 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64305 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64244 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64182 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64079 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64018 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63957 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63896 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63835 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63774 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63713 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63652 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63591 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63530 29 96.6 0 A............................ | A [63503] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //