Array 1 100046-101294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMH010000004.1 Photobacterium damselae strain 727-82 Contig4_727-82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100046 29 100.0 32 ............................. TAAATTTAAAGAGAGAAACCCGAAGCTAAGAA 100107 29 100.0 32 ............................. ATTGGAACATCGAGCCTATCAACTCAGCAAAT 100168 29 100.0 32 ............................. TAAAACAGGTGCATCAGAAATAACGATGCAAC 100229 29 100.0 32 ............................. CGGACGGGGCGTTTCTTGAATCAACAAAACTC 100290 29 100.0 32 ............................. GTGGACACCTTCCCTGATAACATCCATTTCTC 100351 29 100.0 32 ............................. GGCTATCAATATCCAGATGATAGCGGCGATGT 100412 29 100.0 32 ............................. GGCGCTTAATCAAGTCAATGAGCAATTAGGAA 100473 29 100.0 32 ............................. CAAAACAATCAAGAGATAGGCTATTGAAACAG 100534 29 100.0 32 ............................. CACCAAATCCATTTAATTTAAGTCGGACATTG 100595 29 100.0 32 ............................. TTCTGTCATAGGAACTGTCAAAGAATGTTTAA 100656 29 100.0 32 ............................. TTTACTTGATTTTCAAACACCTGTAGAGGATA 100717 29 100.0 32 ............................. CTGGAAGTTCTTATATGTGGCAGACTCAATCC 100778 29 100.0 32 ............................. AGATCTTGTATTCCACTGCTTAACCAGCTCTT 100839 29 100.0 32 ............................. TAATCCATCACATCACGCCTAACGTTTTGAAT 100900 29 100.0 32 ............................. AGTGGCTAATCCATCACTTTGTAGGCGAGGAA 100961 29 100.0 32 ............................. AACATTCAACAGGACGAATTGATAAACCTAGA 101022 29 96.6 32 ............................A TACGAAAGCACAATTGAGAGTCAAGTTTACTC 101083 29 100.0 32 ............................. AAATCAATGGGTGTCTGGTACATCAAACACAT 101144 29 100.0 32 ............................. CGAGAAGAAAATGAAACATTATCTACTTGTGA 101205 29 100.0 32 ............................. GAACGTCTGCCTCATCCATTACTGATGAGAAA 101266 29 89.7 0 ........................GGG.. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCTATACCCATAGGGATGAACCG # Left flank : ACACGGCGTGAGTCATAGGTTGATCAGCCACGACAATCACTAACCCTTTTTCCATAATACGAGCTTTTAAGGTTTTCCATTCCAGCCAAGGTAAACGAGTAAGGCGATCCATCTTTTCAATTAGCAACACATCACCGGCTTCGCTATCGTCGATCAGCTTGTTAAGTTCTGGACGTTCTAACTTGGTGCCGGATTGGTTTTCGATGTAGTAGCCAGCAATACGACTTCCAAATTTGGCGCCAAAGGCTTTCAGTTCTTCTTTTGCTCGTTGGGCATCTTGCCCTGTGGTTGAGGCACGAAGGTAAGCACGGATCAGCATGGTTTCCCCTAAACTGGTTTAATTTAAATTGGTTTCTTAAATTAGTTTAGTATAGGTGGTTTCACAAATGAAGCGGTAAGGGTTGAGAGGCTGTGGGAGGTGGTTTCGTTAGGGTATACCTAAAAGTTGGTAAAAATTTCCCTCTTTTTTTTGATATAAAAATCATTATATTATATTTAGT # Right flank : GTAGCAGCCCGTGATCTCCGCAGTGAGTCAGTGCTAAACGAAACTCATACAGATGATACGATATACTCGGCTCGCATCGGCATATTTATATTTCTGTTCACGCTAGGTATGTACTCACAATTAGTGATGCAGCCTAGGGTGAGTATTGCCAAAATTCCACTCAACCTCTCTCTTATCCGCATTATTCTATAGCTGTGAGTTTATTCGCAGTATTACTTTAACAGCTGTTGCACGCTATTTGTCTATCTTCACTTAAGGTTGTTTACTATGAGCTATTACGATTACTGGGGGAAAACGGATAAATCAGATCCATCTCATTATCATTTATTACCCTATCACAGCTTAGATGTTGCAGCAGTTGGACAACAACTACTTTCAACTGATGCGATTTTAACTCGTGAGTTGTCTCAACTACTTGATATTGATGAAAAACAGCTATCTAACTTGGTGGTTTTTTTTATTGCTTTGCATGATTTAGGGAAATTTGCCTCAGCATTTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACCCATAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110245-112835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMH010000004.1 Photobacterium damselae strain 727-82 Contig4_727-82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110245 29 100.0 32 ............................. ATGATGGAGAGGAAATAGCAATCAACCAGCAA 110306 29 100.0 32 ............................. TGTTAATAAATCCATGGACCGCGTTTTAAAAG 110367 29 100.0 32 ............................. TGTTCATACTGTGTGGGATATTGGTATGGGTG 110428 29 100.0 32 ............................. TGATTTTTAATGTTTGCGTAGTCAATGATGAG 110489 29 100.0 32 ............................. TCGGCTTTATTTATCTGCTCGCCATGACTAAT 110550 29 100.0 32 ............................. AGCAGATTATCAACTGGCGCACGAAAGACGGC 110611 29 100.0 32 ............................. TTGCCCGGTGTTTTCATTTTGTTTGCTTGAAT 110672 29 100.0 32 ............................. GAAGATGAAATTGCTGATATGAAGCAAGAGAT 110733 29 100.0 32 ............................. ATTTCGAATTCGATGATTTTGACGATTTTGAT 110794 29 100.0 32 ............................. GTAAAATAATGGCAAGTTTGCTTAATTGTCTC 110855 29 100.0 32 ............................. CGACCGCAACGGCGGTTTTGGTTCAACAGATA 110916 29 100.0 32 ............................. CAAAACTGCACAGCTCTTGATGGTGACACGAC 110977 29 100.0 32 ............................. TTTTAGCGCAAGTGAATTTTGCTAATATTTCA 111038 29 100.0 32 ............................. TTTTACCAATATCTCTAACAGAGATTCAATAT 111099 29 100.0 32 ............................. CCTTTTACGTAATCTTTACTCGCCATCAGAAA 111160 29 100.0 32 ............................. CGATCCACGACCTAACACTGACACAGATAGAA 111221 29 100.0 32 ............................. ATGACGGAGCGGGTGCAATGGCTGCCCGTGAA 111282 29 100.0 32 ............................. CGGTCTACGCAGACATAGCGCGGACAGAGGGT 111343 29 100.0 32 ............................. AGCGTGGTGAGCGTATCATGTCGCGTTTCGAT 111404 29 100.0 32 ............................. CAGATGTTGCACATGCCGTCGCAGACGTTTGG 111465 29 100.0 32 ............................. AGTTCGGCATGTTAACTGAAGAGTAAACCCAG 111526 29 100.0 32 ............................. CCCCATTACTATAGCAATCAGGGCTAGAAAAG 111587 29 100.0 32 ............................. GAACGACTCTTGCGATCGAACTTTAATCTTTA 111648 29 100.0 32 ............................. CTACCAGCGATGGTTAGACCAACGCACATCAA 111709 29 100.0 32 ............................. TAAGTTCAAATACGATGACAAGGATTTACAAG 111770 29 100.0 32 ............................. AAACCGAGGGTTTGATCTATAATGGGGATATG 111831 29 100.0 32 ............................. TCACCACCTCACAAAGGCTGCTGCCGAAGAAT 111892 29 100.0 32 ............................. AAACCAGTCTGATCTGATTCAGCGTATAGCTC 111953 29 96.6 32 ............................C TGGGCAAACACCATCAGGCTAATGCGAGAGAT 112014 29 100.0 32 ............................. CAACCCTAAAACAGTTGAAGCTAACGGTGTTC 112075 29 100.0 32 ............................. CGAAAGAACTCTTAGCGCAACTCACTCAAACC 112136 29 100.0 32 ............................. AACTTTCAATGTTCTAACGTTGTAGACCAGTA 112197 29 100.0 32 ............................. ACAACTAATGATGTTGTAATCTACGCGCCAGA 112258 29 100.0 32 ............................. TAGAAAAACAACCTTGCCTTATCGGTGTTAGC 112319 29 100.0 32 ............................. GGAACCCATATTAATAGGATTCCCTTTCTACT 112380 29 100.0 32 ............................. TGGGATAATTGCAGGACATTAACCACGGAGTA 112441 29 100.0 32 ............................. ACAGACGCAATACCAATATTTCTTTTGTTGTT 112502 29 100.0 32 ............................. TATATTGCGACCATTTGATAGCTTACTGCCAT 112563 29 100.0 32 ............................. ATTGGAATCAAGTCACCCTCGTGCTTGTATAG 112624 29 100.0 32 ............................. GTTCGAGGTCAACAGGTACATGGATATTACTC 112685 29 100.0 32 ............................. TATTTACAGACGTCAAAAACGAAACGTCCGAG 112746 29 100.0 32 ............................. ACAAACTGGTTTACCAGTTCTTCTTCAGATTT 112807 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCTATACCCATAGGGATGAACCG # Left flank : ACTCATCGATGAAGTACTCAGTGCGGGAGATATTACACCTCCTGAACCTTATATAGATGCACAACCTCCTGCTATACCAGAGCCAATTACGATTGGTGATTTTGGTCATCGGAGCAAATGATCTCATGAGTATGTTAGTTGTAGTAACGGAAGCCGTACCACCGCGTCTGAGAGGGCGTCTTGCTGTTTGGTTATTAGAAGTCAGAGCGGGTGTATATATAGGGAATGTTTCTAGAAGAGTCAGGGAAATGATTTGGGAACAAATTGAATGTCTTACTGAAGATGGCAATGTTGTAATGGCATGGGGAACCAATACCGAATCTGGCTTTGATTTTCAAACCTATGGCAAAAATCGTCGAGAGCCTGTTGATTTAGATGGGTTGCGGTTAGTGAAATTTTTACCTGCTGACATGATAACTGAATGAAAAAATGTTCTTTAAAATGTTGGTAGATTTTTAGTGATAGTTTTTTACCTTATAAATCAGTAAGATATTTTTAGA # Right flank : ATGATGGCCTTGGCCTTATTCGCTCGTTCCACTGAGGTAGAACGCCACTGACTTATCGTGCTTATGATATATTAGTGTTACCGTCATGTAAGAAAACGTTGACTCAGACTCACAAAAATACATGTATGATTGCGCTTGTTGCGTCATCAATAAACGCCAATAACGTGTATTCGTCAGCTCATCCTTCAAACCAATAATGGGGTGAACCATCGACTTGAGCTAGCACACCCAAACAATCACTCCTTGCGCAAGGTTGGTATACTTTCCTACACTTTTTCTGTTTTGGCATCCAAAGGTTGTTAGTAATCACCCATTGACGAACCGCCTCGCCTGATAAACATATTCCATTGATTTATAATATTTTTTAAGTAATTTAATTAAGACCAAAATCATAGTGATGTATTTGGATTAACTCCAGAACTAGGGATTTAAGGAGGAAGCAATACTGATGGTTCCCTGGTCGGGTTCGCTGCTTAGAAATAAGTCCTTGAAGACCAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACCCATAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 255804-256268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMH010000001.1 Photobacterium damselae strain 727-82 Contig1_727-82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 255804 37 100.0 34 ..................................... CACATTAATAATATAGGTTTGAAAATTTCTTGAA 255875 37 100.0 34 ..................................... TGATTAGAAATGGAGAAATGGTCAATATAGCTCA 255946 37 100.0 33 ..................................... TCTAGCAGACAACATTGTTACAGTAGCTGCGTC 256016 37 100.0 35 ..................................... TTCATCCAAGTAGTACGTTCGCTGAATCCACCTTC 256088 37 97.3 35 ............G........................ TCAAGAATGGAGCAAGCAATGGGTTGATAGTAACT 256160 37 100.0 34 ..................................... TCAATATCACGCTCTGACATTTCTAGTGCTGTTT 256231 37 89.2 0 .............................G.C.C..A | G [256262] ========== ====== ====== ====== ===================================== =================================== ================== 7 37 98.1 34 GTCAGAAATGACATGCCCTGCTTGAAGGGATTTAGAC # Left flank : AAAGATTGTCATATACCAGTGATCATCAACACGATTCGTACTAATGTCATCGTGTTTGATATATCTTTTGATCTCATGGTGCAGACAGGAAAATTAAATATTGCGATCGATATCGTGAATGATCACCGCAATGCAAAAGTCATCATGAATATCAATGATCGCGCGAAACTTATCCCTTATATCACGTTTAACATCGCTCAATTATGCGATGTTATTTCGACGCATACAGATGATCAAACAATCGACATGAGAAAATTGGCAGTATAAAAATGCAAACTGTTCATAAAAATCAACACTTAACACATTATTAACATTTAATTTGAACATTTTTTGACAAAGTTTATGCCATAAAAAATAAATTTAACACAACATACTGATTTATAATTGGTAAAATATAGTCGGCATTAGTTTTGCATAATTTGTAAATTTTATTGGTGTTTAAAACACCTGTTTAACTGCATTATTGCCTTTTATAAATCAAACAGTTAAAATCTTTCCGT # Right flank : AAACGGCTTGATATACAATAGGCCATTTTTATTAAACTTTGCTGTTATCTCCTATCTTTAATGTGAAGCTCTTACCATTAATCATGTTCTGATCTGATACTATTTTATGCATCTATTTCAGGGGGTTATTATGATCATTCACATTAATCTTATCTCACACCAATTACTGCCCAATGTTATTTCAACATTAGTTAATTGGGAGCAATTACATCAACACCAAGCCATGAAAGTTATCTTGATCCAAGGGGATAATGCGCTTGCCGATAAAACCCAAACGCTCTATCACTTTTATCAACACCTTGGTATTAACGACATTGAAATCCAATCTTGCCATACCAGTATGGATTACGCTCGATTGTACCAACACGCAAAAAACCTCTTTGAACGCCTCCGAACGGAGTACCCCGATGCGATGCTTGCTTTAAATGCGACAGGCGGCACCAAACCGATGTCTATTGCCTTTACACAGGTGTTTGATCAACTCGAACAACAATCGATGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAATGACATGCCCTGCTTGAAGGGATTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 272487-273096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMH010000001.1 Photobacterium damselae strain 727-82 Contig1_727-82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 272487 37 100.0 36 ..................................... TAATAAATATTCGCTGTTGTCTTCTGACGATAATGC 272560 37 100.0 34 ..................................... TAAACAGCGACACGGAGCAGGAGTCTTACAAAAA 272631 37 100.0 34 ..................................... TTCTTGCTGCACTAAACTACGGCGAGAAGTCTGC 272702 37 100.0 36 ..................................... TCGGTTACCACCCATAGTTGTGTCAGTGAACTTAAA 272775 37 100.0 34 ..................................... ACAGCGTCACATTCGTTTCCCTCTGAAGTTTCTG 272846 37 100.0 34 ..................................... GAATAACAATATTCCAGTATTCTTCCAAGGAGAT 272917 37 97.3 35 ............G........................ TTATTTAATATCACCGAAATGGTGTAATGCAAATT 272989 37 100.0 34 ..................................... CTCTGGGTCAACACCCATATAGCGACACTCCTCA 273060 37 86.5 0 ............G..................AA.A.A | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 98.2 35 GTCAGAAATGACATGCCCTGCTTGAAGGGATTTAGAC # Left flank : CAGTATCTATCACGAGTAAAGCCATCTTAAAGGATGCGTACTCACTTTTGGGGGAGACAAGTTTGTGAGGAAGAAAGATACCTTTCGCGCTATTTTCACTATCAAGAAGCAGTGTGTTGTCATCACTCTCATGGCGAGACATGGCAAGATATATAGCGAAATGCTCACGTCGGTAAAATAGCGCAAGCCCAATGTTTACACTATTAACACTTATATTAATTCAAAAAAACAACATAAATAACGACAAATCAACTATTATTTAGTTTAAAATAAAAACCATTAACAATCTTTGACATTTTACAATTTATTAATATTTATTTTGCGTAATTTCCGACAAGTATTATGCCAATAGAAATAAAAACAACGTAACACACTGAATTATATGAAGTGATATATAAATGGCATCTATATTGCTTAATTTATAAAATTTACCACTGTTTAAAACACTTGTTTAACCGCATTCTTGCCTTTTATAAATCAAACAGTTAAAATCTTTCCTT # Right flank : ACCGACATCGCTGTCGGTTTTTTGTGATCATTATTCACTATTCAATAACATCAGCTTTATACGCACTAGATTTTACCTCTGTTGGCCATAACTCTCGGCTTAAATCCCCTTTATTATTTTCCAATGACCACTTGTATTGCTCGAGTAACGTGATCCACTGTTTAACGCCAATACGTTTGTTAGGATCATGCGCCCCATCGGTAAACGTTTGGATAAATGCCGATTTTAGCTTAAAGGTTAAATGGCTCCACCATGTATACCACGGACCAACAGGGATCGAACCTTGGCTTCCTGGACGAATTTTTTGTCCATAAGGAAAGTGCCCTTTTTTTATATTTTCCACGGTACTGGTGCCGCCGATATGTTCATAAGGATGCCGCCCACTCATTAACAACATGAAACAAATCACCGCCAGAGAAAAACAATCACTTTGTGCATTACGCTCAACATTGCGTAAATTTTTTCCCTGATGCTCTGGCGGGATCATCGCATCTTGGCCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAATGACATGCCCTGCTTGAAGGGATTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //