Array 1 1856-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEJN02000102.1 Aggregatibacter actinomycetemcomitans serotype e str. SCC393 contig00230, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1855 28 100.0 32 ............................ ACGTTTACGTCCCGATGGTAATTGTCCTTTAA 1795 28 100.0 32 ............................ TATCATAATCATGTCATAAACTTGTTCAAGCA 1735 28 100.0 32 ............................ TACAAATTGGTATAAAAGTGATTTTAGAAATT 1675 28 100.0 32 ............................ CCCAAGGTTTAGAGGGTGTGTTTATGGACGTT 1615 28 100.0 32 ............................ TCCTGATATGGGTTTCGTTATTAACACAATTT 1555 28 100.0 32 ............................ AAACGTAATAGGAAAACCTATATCCTTTTGTT 1495 28 100.0 32 ............................ ATTGAACTTGCTTATGAAATGAGTAAAACAAA 1435 28 100.0 32 ............................ TACAATCAATGGATAGGTTGGAAATTTGTAAA 1375 28 100.0 32 ............................ ATAAGGAAAAACAATATGAAAAAATTTATTTA 1315 28 100.0 32 ............................ TACTGTTGCAAAAAAAATGTAGTTTTCAACAG 1255 28 100.0 32 ............................ TACAAAACAAGGTCGATTTTAACAACCCCTAA 1195 28 100.0 32 ............................ ATTGATATTGACAACTGGTGTGATAAAAAATG 1135 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAAACCGG 1075 28 100.0 32 ............................ TAACAGAAATAAGAAAAAAGGTGAAAGAATTA 1015 28 100.0 32 ............................ TCTCGGAAAACAGTGTGTGCGGTAATTTTTGC 955 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 895 28 100.0 32 ............................ TACAATGTATCTGGGACCGGTTTAAATAATTA 835 28 100.0 32 ............................ TATTGGGAATAATATGGCTGCGCCGGTTATTA 775 28 100.0 32 ............................ TCCTCATAAGCTTTGCGTCGCTCTGCTGCGCC 715 28 100.0 32 ............................ TGAAAAATACGGTAATGCTAAAGAAGATTTAA 655 28 100.0 32 ............................ TGCAAACGCTTATTATGATTAAGAAACAAAAC 595 28 100.0 32 ............................ TTGTTTGAGTTTCCTGTTTCGTTGTGATTCAT 535 28 100.0 32 ............................ GCAAGCGTCTATATGACAAGGAACGAATAAGA 475 28 100.0 32 ............................ TCGATGGTTTACTTATAAGCAAATTAAAGCAC 415 28 100.0 33 ............................ ATGAAAATGATTAAACGACGACCATCTAATAAT 354 28 100.0 32 ............................ ATAAGCCCCATTCAAAAACGCCTGTTTTTCTT 294 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTATTCTGG 234 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 174 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAAATCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //