Array 1 99163-98585 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGE01000011.1 Escherichia coli strain MOD1-EC5150 MOD1-EC5150_11_length_160254_cov_45.1243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99162 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 99101 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 99040 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 98979 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 98918 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 98857 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 98796 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 98735 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 98674 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 98613 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116462-114664 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGE01000011.1 Escherichia coli strain MOD1-EC5150 MOD1-EC5150_11_length_160254_cov_45.1243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116461 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 116400 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 116339 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 116278 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 116217 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 116156 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 116095 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 116034 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 115973 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 115912 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 115851 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 115790 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 115729 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 115668 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 115607 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 115546 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 115485 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 115424 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 115363 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 115302 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 115241 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 115180 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 115119 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 115058 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 114997 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 114936 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 114875 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 114814 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 114753 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 114692 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //