Array 1 617119-617354 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003136.1 Streptococcus thermophilus TH982 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 617119 36 100.0 30 .................................... TTTTTCTATGCAGGAAACCATAAACAAGTA 617185 36 100.0 30 .................................... CAAATCTTACCCAGGAGTTACTGTAGATGG 617251 36 100.0 30 .................................... GAAAAAGTCCGAGAGTATTTGAAAAACGTA 617317 35 88.9 0 .........................CTT...-.... | GGC [617341] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAATGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : CTGTAGTGGGTGACGAAAAGCTAACATCTAGAGAGGACCGGATAGGTCCTTTTTTTATGTATGTTCAGTGTGATGAAGACACGCTTCTTAAAGTTGATAAAGTTTCTAAAACCGAAGNNNNNNNNNGTTTTTTTGAAAGTCGTACTTGATCATCTTTCCATGGCAATGAGGACATGATGGTGCAGGGTAATCAAGTTTTGCTTGAATCTCGATATGAGTGTCAGTTTCAAAAACAAGTGAAATAATGATATTTTGGTCTTTAATTCCTATTAATTCTGTGGTATTCTTAATAGGTCTCATAAGTTCTTCCTAATGATGGTTTGGTTGCTTTTCATTATAGTTCTTATTGGACTTTTTGTGTACACTCAAAAAGCTCTATAATCTCTACAGTAGTTTTACCCACTACAGAAATTATATAGCCGATTTAAGTAACTGTACAACCAACCAAGCGAACACAGCAGTAGCACCGCAGTTTTTGTACTCTCAAGATTTAAGTAACT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 855081-855339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003136.1 Streptococcus thermophilus TH982 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 855081 37 100.0 35 ..................................... TTCGTAACTGTTTAATTCTGTTCACTTATTCCACC 855153 37 100.0 42 ..................................... GACCTGGTGCATATATACCAACCAGTTTGTCTTTAACATTTT 855232 37 100.0 34 ..................................... CTTAAATCAATGTCTTACCTAAACCGTGAATTTT 855303 37 81.1 0 ..............................TTTTTTG | ========== ====== ====== ====== ===================================== ========================================== ================== 4 37 95.3 37 GATATAAACCTAATTACCTCGAGAGGGGACGGAAACT # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACAATATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGGTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCACGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGCGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1337130-1335873 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003136.1 Streptococcus thermophilus TH982 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================== ================== 1337129 36 100.0 30 .................................... GGCTTGCTAGTGGGTTTCTGTGGGCTTCCT 1337063 36 100.0 30 .................................... TTTTGTACAAGGCAAAGGAGTTACTCCAAA 1336997 36 100.0 30 .................................... TGAATACTTAAAACTTAAAAAAACCTTTAT 1336931 36 100.0 30 .................................... CCTCAAGTCGGTCATACTCAGCCAAAATGA 1336865 36 100.0 30 .................................... AAGTTTTGGTGGCACTCAGACAGACAATTT 1336799 36 100.0 30 .................................... AAACGTATCAGATGGAAAACAAGGCCCTAA 1336733 36 100.0 30 .................................... CGCTAAACATATTTACATAACCGAAGGTGT 1336667 36 100.0 63 .................................... GCTCAAAATCTTCGAATAGGCAGTCGANNNNNNNNNTAACCCACCGTCACGTTATAGCGATGA 1336568 36 100.0 30 .................................... AAGTATTAATCAAGACTGGGATGCCGAGAC 1336502 36 100.0 30 .................................... TGATGAAGTCAACATCACAGACACTGGTAA 1336436 36 100.0 30 .................................... TGCTGACGGTTAGATATAATTTTACTGGGA 1336370 36 100.0 30 .................................... TTGAAATGATTGACAAAACGTCACTTGCAA 1336304 36 100.0 30 .................................... ATCTACCCAAGCGGAAATTGTCAATGTTGT 1336238 36 100.0 30 .................................... TTTTCCTCAACGTTTTATTTTTTCATTGAA 1336172 36 100.0 30 .................................... TGAGTACAATTTTTTAGCCAGCGACGGTAG 1336106 36 100.0 30 .................................... TACAGTTCCGTAGGCAATAATTTTTCTTGT 1336040 36 100.0 30 .................................... TATCACGGTTAAAGCTAGAAATACCGATAA 1335974 36 100.0 30 .................................... TAGCAAAACTTACACAAGACAAGAATAGTT 1335908 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================================== ================== 19 36 100.0 32 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCATAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTGGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTCTGATTCAGGTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAAATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //