Array 1 116843-108952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHI010000036.1 Shewanella algae strain 159418 159418_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 116842 28 100.0 32 ............................ TAGACCGTCTGATTATCAAGATGATGAAAACG 116782 28 100.0 32 ............................ GTTCGCTACGTTCTCACTGGCTTTGTTGAATG 116722 28 100.0 32 ............................ ATCCGGCCACATGGCCAAGGAGAGTTTTTGCT 116662 28 100.0 32 ............................ GTATAGTGCCTCGCAACTAACAATGCCGATAA 116602 28 100.0 32 ............................ CTGAAACTGGTGAAGATATTGTTCCGGATATT 116542 28 100.0 32 ............................ TGCATTGTGCGAATTTAGTTCGAAATTCATCA 116482 28 100.0 33 ............................ CACTCGCTCTGCCAATACAACTGCCATGTACGC 116421 28 100.0 32 ............................ CAAATGAGAAATGTGATTTCTATGGTGTCTGT 116361 28 100.0 32 ............................ CATATCGGCAAGGCGATCACCAGAGATTGCAT 116301 28 100.0 32 ............................ GTGGATGCTACACTTCTGAGACGCACCCCAGT 116241 28 100.0 32 ............................ GAAATCCAGCGAACTCGATAACCGAGATTATC 116181 28 100.0 32 ............................ TCAGCACCCAAAATGACAGATATACAGGTACC 116121 28 100.0 32 ............................ GAAACCCCAGCGCCTTTAGCAACGTATGCAAC 116061 28 100.0 32 ............................ GTTTTCAGCTTGAATTTGAGCCCAATCCAGCA 116001 28 100.0 32 ............................ TGCACGGGAATTTCTGGGCGACACAACTGAAA 115941 28 100.0 32 ............................ AAATTGCAGCAGCTGTGCCAGTACCTCGCCAC 115881 28 100.0 32 ............................ ATCTTTGCGAACTTCGTGCGGCTCTGCGTCAT 115821 28 100.0 32 ............................ TAGCAAATAACCTGCCGTATGCTTATAAGTTA 115761 28 100.0 32 ............................ TTAATGCTCTACCAATGATTTGCTGGAGCAAT 115701 28 100.0 32 ............................ ATCGCGGATCACTTTCTTGATTTTAACCGTTG 115641 28 100.0 32 ............................ GATAATGGTCGAAGGATACACAGAAGCACTTC 115581 28 100.0 32 ............................ ATGACTAACGAACTATTCAGAACGCTATTCAT 115521 28 100.0 32 ............................ ATTCAGCAACGGGATGAAAGAGAAGTTTCTGG 115461 28 100.0 32 ............................ TTGGAGAGCAGTCATCTATTTACAAAGCGTCT 115401 28 100.0 32 ............................ TGCTAGTGAGAATGTGTTGTTTGCTCGACCAC 115341 28 100.0 32 ............................ ACGGACCCTTAGTAAACTTAGCTTCACTCATA 115281 28 100.0 32 ............................ AGATTTGTCGTTATCGTTTTTAATTCCTGTCT 115221 28 100.0 32 ............................ GGGCATCGTTGAAGGTGTGCTTTCGTCATACT 115161 28 100.0 32 ............................ ACTCACCAGAGCAGCACGGCAGTCCGAAATCC 115101 28 100.0 32 ............................ AGAAGGGAATCCGCCCGGCAGGCAGATCCAAA 115041 28 100.0 32 ............................ TTGGCCCCAAAGCGCCTCAATGCGTTTTGCCC 114981 28 100.0 32 ............................ GTTGTGAAATTGCTCTATAAAGAAACGTCGGG 114921 28 100.0 32 ............................ ACCAAGAAATGCATGTCTCTTTTCTCGATATC 114861 28 100.0 32 ............................ TCAAGCCGACTTTCTCTCCCTTGATTGCAAAT 114801 28 100.0 32 ............................ CCATACCGTCTAGGCACTGGCTATATTTATGC 114741 28 100.0 32 ............................ ATGTCAAACCGCATGGCAACACTTGACGGTGC 114681 28 100.0 32 ............................ TAGGCGATAGGAGATAAAGAAAATGAGCGAAC 114621 28 100.0 32 ............................ ACGTTGCCTAGCTTGATTTATCGCGAGTATTT 114561 28 100.0 32 ............................ AAACTCATCTTTGTTTTGCGGGTCAAGGATTT 114501 28 100.0 32 ............................ TCCTTCCTGTTACAGCGCAGTGCATCGCCCAC 114441 28 100.0 32 ............................ ATCTAAAACTAACCCAAATTGCTCAAGATATT 114381 28 100.0 32 ............................ TGTGACGATTGGCTCAGCTCGATAGCGTATTC 114321 28 100.0 32 ............................ AATCTCAGGCGTTGCAGAAGTCATGCGAGCAT 114261 28 100.0 32 ............................ GCAACCTGAAGTCTGAATCCAACCTCTTAAAT 114201 28 100.0 32 ............................ ATCAACGTAAATAGCAATACCATGCTTATTTG 114141 28 100.0 32 ............................ AAAGCCAGCGACAGCTACAGAACGCCAAAATG 114081 28 100.0 32 ............................ TCCTGTTTACTAAAATTATTTATCTAACAATC 114021 28 100.0 32 ............................ ACATACTCGCGCAACCGGCTGTTAGCAGCGTA 113961 28 100.0 32 ............................ AGAAGGCGCGCACTACTGGCAAATATTCAATG 113901 28 100.0 32 ............................ TGTCATTGTAACAAGGCTGGCCTTGAGTACAT 113841 28 100.0 32 ............................ AGAGCAAAGAAAGGAGTTCGACCTCTAAAACC 113781 28 100.0 32 ............................ ACTATAAGTGGCTGTAAAGTCGTTAGCTGTAA 113721 28 100.0 32 ............................ GTGAAAAACACAGGCTGAGATAATTGCAATGT 113661 28 100.0 32 ............................ AGCTAGCGCAAGACGTTGTTAATGGTGACGTT 113601 28 100.0 32 ............................ ACGAGAGGGCAGCGAGGGGCGCTCAGTCAATG 113541 28 100.0 32 ............................ ATTGATAACGGCTTCTTGGGTCGCGCGCTTAT 113481 28 100.0 32 ............................ TGCTGACAATAGGCGTTTTAATTCACCATCAA 113421 28 100.0 32 ............................ TATTAACTGAGAGCTTTAACATTTGACTTGAC 113361 28 100.0 32 ............................ AGTGTCGTCAATGGCATAGATGTAGCCTGTAC 113301 28 100.0 32 ............................ TTGGCAATGATGCGCTCGGTTTTGGTGCTCCC 113241 28 100.0 32 ............................ AAAAAGAAGTTGAGCGCATGGCAGAGTATCTT 113181 28 100.0 32 ............................ AGACTCAAGAATCGTTTTCTTTGCAGACCATG 113121 28 100.0 32 ............................ AATAAGCGGGTCACGCATCATCCTTATCAGCG 113061 28 100.0 32 ............................ GCTAGTCACAGCGCAGGCCAATGGTGAAGTTA 113001 28 100.0 32 ............................ AGTAGCATTAACAAATTCTGCGCACCATGCAA 112941 28 100.0 32 ............................ TCTCTGTCTGCTCTCTTTGTTTTGCCTGTTAC 112881 28 100.0 32 ............................ GCCTAAAAAATCGTTATCGAATACAGTAAGAC 112821 28 100.0 32 ............................ AATGATGCACAAGAATGGCTGGGTAATAACTA 112761 28 100.0 32 ............................ TTGCCACTGAATCAAGAATGCCAACTAACGTC 112701 28 100.0 32 ............................ TGCCCAGTCACAGCATTGGTTGCATAGTCAGA 112641 28 100.0 32 ............................ AGCTCGAATGACTCGTTAATATCGACCCGGGT 112581 28 100.0 32 ............................ TAACGCTGGAGGCGGCGGTGCAAACAAAAAGT 112521 28 100.0 32 ............................ GCAATGAGGATACTAGGTCTGCTGCTTATTTT 112461 28 100.0 32 ............................ AGGTCGCGCTTGCCTGCGTCATTGTCGTAAAT 112401 28 100.0 32 ............................ AAGGGTATGAGTTTGGAGCAGGGCATTATCCT 112341 28 100.0 32 ............................ AGTTTCAGGGATTTTTATGGTTTCGCGGATGT 112281 28 100.0 32 ............................ GGACAGTGTGCGCTTGGTGAAGTTGTAGAAAA 112221 28 100.0 32 ............................ ATCAAGAGCTAGTCCAAAATGCTCTAGGTATT 112161 28 100.0 32 ............................ TCTATGCGTTTTGCCCAGGCGCGGAACAGATG 112101 28 100.0 32 ............................ GTTCACTTCAACACGGATGTTTTTCATCTGCG 112041 28 100.0 32 ............................ GCTATCCACCATGCCAGCGCCCTGGCTGAACA 111981 28 100.0 32 ............................ ACACGCGCACCATTGCCACCTTTGGCACATAC 111921 28 100.0 32 ............................ GTGCGCCCTGCGCCAACGGCAATAGCCCCTCG 111861 28 100.0 32 ............................ AGCGGCCAGCGCTTAACATTTGACTACGAGGC 111801 28 100.0 32 ............................ GACCTCGAGGCCCAGCACGAATGCGTCCGACA 111741 28 100.0 32 ............................ CCGACTGAACCTCCGCCCATGCCTGCGCCCAT 111681 28 100.0 33 ............................ CCGTCGGCCTTGCGGCTTATGTGCTTGGTTAGC 111620 28 100.0 32 ............................ ACAGTTCGAACCGGCGACGCTCGAGCACCTTA 111560 28 100.0 32 ............................ CGGCTGGAAAGATCTGGATAACGACGAAGAAA 111500 28 100.0 32 ............................ CAAAACAGCCCTAGCGCGTCAACCCTCATATT 111440 28 100.0 32 ............................ ACACGGGGTTATGATTCCAGCTTCGATAAGAT 111380 28 100.0 32 ............................ CACACTCAAACCCATGATCTTTTTTCCACTTT 111320 28 100.0 32 ............................ TTGATTTGCTTCATCGATGGCTAGAGACGCCG 111260 28 100.0 32 ............................ TGACCACCACCGCTTTGATAAGGCGCCAGAAT 111200 28 100.0 32 ............................ AGACAGTGAATAACTGTTGGATGAACTGAAAA 111140 28 100.0 32 ............................ GTGATATAAGTGTCGGCTGGTGCAGGATAAGC 111080 28 100.0 32 ............................ AGAAACAATGAGAGCGCTTGCTGCCGCCGTAA 111020 28 100.0 32 ............................ ACCCACCACTTCCTCAGTCGTGCATTTGAAGA 110960 28 100.0 32 ............................ TTCTTCATTTACGATTGATGATGCGTCCTTTC 110900 28 100.0 32 ............................ ATTTTCTCTTTGAGAACCTGAGCGGGGTTTAC 110840 28 100.0 32 ............................ TTAGTGCGGTTGGTTCTGCCCGAAGTATGGGC 110780 28 100.0 32 ............................ GTACCTGCACCGACAACGCCAACCTCACAACA 110720 28 100.0 32 ............................ TTAACATTAAGCAAGTTTACTGTTGATACTTA 110660 28 100.0 32 ............................ TGCATAGATACGGGCATAGATGCCAATGGCAA 110600 28 100.0 32 ............................ TGACTTGCGTTTACCGACGAAAACTTAATTCT 110540 28 100.0 32 ............................ AATCGTAAGGGGCGATATTTAACGGCAAGTGA 110480 28 100.0 32 ............................ TGCACCGTTACCGTGCCCGCGCCATACCAGGC 110420 28 100.0 32 ............................ TACAACCCAGGCGCGGCAGTAAGGGCGACCGC 110360 28 100.0 32 ............................ CGGCCAGCATAGCAGCCGGGAACATTCAAAAG 110300 28 100.0 32 ............................ ACATCCTGAAAAGCTCAGGAAAGAGCGGCAGC 110240 28 100.0 32 ............................ TGCTGGCTGGGATGATGACGATATGGGGACGT 110180 28 100.0 32 ............................ TGGCCAACTCGGCGTCTTTGATGCCAACCAGC 110120 28 100.0 32 ............................ AGTAGTTGATCAGCTTGTTCGAGCTGCGCTGC 110060 28 100.0 32 ............................ AGCTGCTGAAAATCATTCAACAAACGGGGTAA 110000 28 100.0 32 ............................ TTGGCACTGCGCTTGCCGGTAACCTTTTCAAG 109940 28 100.0 32 ............................ TCATATTCAGCAACAAGTGCAAGTTGCCTATC 109880 28 100.0 32 ............................ ACTACCAGAAGCTGAGCGCCTTATTGCTACGA 109820 28 100.0 32 ............................ TTATTAACGCCCACCCGTTAATGCCAAACCAC 109760 28 100.0 32 ............................ TTTAACATCCCTGCAAGTTGTGCGGTGTTGAT 109700 28 100.0 32 ............................ TCCCATAAATAGTATGCGGTGGTAGCATTTGA 109640 28 100.0 32 ............................ GCTTGGTTGTCTTGATGACGTTCGTGCTCTTA 109580 28 100.0 33 ............................ CTTGATATCACAGTCGAAACTGGCTCAGATATG 109519 28 100.0 32 ............................ TATGAAAAGTTCAACGCGCTTTTGGTTCCTCG 109459 28 96.4 32 .....T...................... TCGGCAACTTCGCGGTTCATCATCACAATATC 109399 28 100.0 32 ............................ ACACAAGTGGGCTTTATTTTGCGCAAAGATTA 109339 28 100.0 32 ............................ AAGCAAAGAAGGGGACGCTTTTTCGTCCCCTT 109279 28 100.0 32 ............................ TTGATTTGCAATTCGAGCCTCATCCAGAAGAT 109219 28 100.0 32 ............................ TTCAACTTCTTCGGCAAGAAGTCACCATCAGC 109159 28 100.0 32 ............................ GTAATAGAGTCAGCGAGGCAATAATGTTCAAC 109099 28 96.4 32 .............T.............. AATCTCACATAGAGCATCAAATTCAACTCTGA 109039 28 100.0 32 ............................ GTCACAAAGAGAACTAAACAATGTCTAGAGTA 108979 28 92.9 0 ............T........G...... | ========== ====== ====== ====== ============================ ================================= ================== 132 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTGTTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACATTCTTTTATTGCTTTATTCTATT # Right flank : GGTTTTCTGGTGAATTGCACTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAAAGTCCTGCATTTGTGGGGCTGAAGAGGTCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //