Array 1 489-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000196.1 Trichormus variabilis V5 NODE_215_length_10139_cov_8.77271_ID_429, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 488 37 100.0 34 ..................................... TGGTTTTTCTCGCGTTATGAATGTTTTTGCTTTT 417 37 100.0 34 ..................................... AACGTTATGCCACTTCAAGGCAATAGCTTCCGAC 346 37 100.0 32 ..................................... CTGCGGTCAATTGCCTTTGTGCATCAGTTTGA 277 37 100.0 34 ..................................... CTAACATCGCCCTAGCTAAACCAATTAAATTCAA 206 37 100.0 39 ..................................... TAAGGTTGAGCTAACTAATAAACCGCCGGAAGAAATAAC 130 37 100.0 34 ..................................... TAACTTATTTCTAACTAGTAACTGAAGTTGATAA 59 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 100.0 35 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TGAAAGCATTACAGGATTTACCCTGTAATTTGCCACCGATTTTAGTTATTGACCAACAATTAAGTCGCACTCAAGTTACTTCTCGCAGTAGACTGACTCATCATAAAAAGCAGGAGTCAGAATCCATCACAGATGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACCTGTTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATGAGCGTCAACCTCTAGGTGTTTTTTTCCCAGTACCAAATTTTACGGCTGAAATGCTTATGCTGTAAGGATTTGCATCTGTTTGGCTTCAGTACGAGGTTGACGCGATCGCTTGAATCTCTTACCAGGGTAGCTTTTTCGCTATTTTTTAAGCTGCTACTCTTGACAACTCAATGGCTGAAAAGCTACCTTAGGTTCAGATTGACGCAACCGCACCTTGAAAACTAAATATAGTAAGCCTTCTAGACCCCGGCT # Right flank : CCAATAATTATTAGTATTATTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 38-1972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000277.1 Trichormus variabilis V5 NODE_226_length_9771_cov_7.68125_ID_451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 38 37 100.0 40 ..................................... AAGCGTAAATCCGTTTTTAGCAGGTACATCTGGGGCAACG 115 37 100.0 33 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCATCAG 185 37 100.0 36 ..................................... CGAATCCCATCCTCTCCGTTATTCCAGCGATTTTAA 258 37 100.0 36 ..................................... CAAACCCTTGCTGTATATGACTTGATCCAGATGATC 331 37 100.0 36 ..................................... CAATTAATTTGGAATGTTGAAAGCTTTCATGGCTTA 404 37 100.0 34 ..................................... ATGCTTAGTCTTCCGCTACATCACAGAAAGACTA 475 37 100.0 38 ..................................... TTAGTTTTTTCTAGCTCTTGTTGTAGGAGTTGAATTTG 550 37 100.0 34 ..................................... AGACTAGTCCCGGCAAAGTGGCGGAAACAGGAAC 621 37 100.0 37 ..................................... TGCGGCAACAGTACATAATGCTTTTCAACTTTCAAAT 695 37 100.0 33 ..................................... TCTTTGGCTTTTAATTCATCTGGTTCTGGTGTC 765 37 100.0 35 ..................................... GAAGCATCTCACACCAGATGGCAAACTACAGCAAC 837 37 100.0 36 ..................................... ACTAGTACACCCTGGGTGGCTAGAGACACGCTAAGA 910 37 100.0 34 ..................................... AATTATTTTCTTGATTGGCTGCTGTATGGCTTTG 981 37 100.0 37 ..................................... AAGTCGGTAGTGATTTTAAGAAAGTTATCCTCTGCGG 1055 37 100.0 42 ..................................... TTAGCTTAAGCCTATCCCTGACTATTCCCAGCACTTTATCAA 1134 37 100.0 34 ..................................... AGCAGATGACCACTCAGACCAAGGACGCGGAGAG 1205 37 100.0 33 ..................................... CAGGAATTGCAAAATCTTCAGGTTCATTAGTGA 1275 37 100.0 34 ..................................... CTATATAGTTGTTTTGGATCTAGGTCTAAAAGTA 1346 37 100.0 35 ..................................... TAGAAAAGCTTGGTCAATGTCTCAAGAACTTTGGG 1418 37 100.0 34 ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 1489 37 100.0 34 ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 1560 37 100.0 34 ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 1631 37 100.0 35 ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 1703 37 97.3 196 ....................................T GGCGCAGCTAGGACACTTGATTCTTCCATTGCCTTGTTTTAGTGTTAGTTCGACGAAACCTAACCCCAACCCCTTCCCTACAAGGGAAGGGGCTAAAAATCCACAACCAAGTACCAAATAATCAGGGTTTTAAGCCTCTCCCCGCGTCGGGGAGAGGTTTGGAGAGGGGTTATTCCGAATTTATCAAACCCACGTT 1936 37 89.2 0 .......C......................C....CA | ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 25 37 99.5 42 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : AACCAGTACAAGATGCTAATACAATTACTATTCAAAAG # Right flank : AAACTCTTAATATCACCTGTACCTACAGCCGCTTTACATAGAGTTTTAAAAAACAAACCCCGACTAATTATCTATTTAAAGATAGAGGGTAGAATACTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATACGGCTGTAATGACAGCAGTAACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCTACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATGAGTAATATTGTCAACCAAGATATACAAAACCCATTGATACGCCAAGTTAAAGGGTTATCAGCAATTTTACTTAAGCGGGGACGGGCAATTTTCTCTACAATCTTGGTGACACGCCGCAGATTTTGAAGAAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAACCATCTGTACCGATAATATCAGACAAGCAGC # Questionable array : NO Score: 8.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 4487-4670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000230.1 Trichormus variabilis V5 NODE_261_length_8943_cov_8.13072_ID_521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4487 37 100.0 36 ..................................... GACAAAGGTAAAAAGACTTGGAGTTTGGAGGAACTT 4560 37 100.0 37 ..................................... TTCTCCTCCCTCCAGCGTCGCACCACAGGAATACTCA 4634 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 37 GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Left flank : CGATCGCTGCTTATAATTCTCGCCGAAGAACCTGATTGACAAAAAGCAGAACCTTGAAAATAGAATAGATATAACTAATAGCGCCGCAGTTCATGCTTTGTTCAAAGCCTCTGTACTGTGTAAATGTGGGTTAGTTTGACTGTTGGAAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGAGGACAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCACCTTAATTATTTATTTTTGGCAAACCACAAGCGAGGTCAATTTTCCAGGGAGGTTTGCCAAAAGTCCAAATCCCTTGTCTAGTCTGCGTTTTATTTATTGGTATGTTTCGATGATTCGCCTTGAAGGGTGAAGTCGAGAGCAGATTTAGACACCTTTGCCAAAATCACTTTTGGAAGTGTCTCTAGATAAGGGTTTGGTCGGGCGGA # Right flank : GACCTTCATGCAAGGATATAAAAAATTTTAGGTGGGTTGAAAGGCGCACTTCGTTCGGGATTTTCCCTGACCGAAACAGTACCAATAAATCAAAGCTATTATAATAACAGCTTCTAATGCCAATACACCTTGATGACTAAGTAATTTGGCAACGCGGACAACAACTTGGCAATACGGACAACAATTTGTCAACGCAGACAAAGAATTTGGCAATCGACAACAATAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGTTAAAAAATTTATACGCCTTTTTTAGCATAACATAAATAATAGTCAATACAGAAAAGACATCTACATCTATATATATAGATGAATCGGAACGGGATTTGCTTGCTAGGATTAGATTTGTATAACATTCAGTGGTAAAAGCGGATTGTGACTGTAAAACCAGACTGGTTGCGGGTAAAAGCGCCTCAATGGGAGCGCGTTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4302-6720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000537.1 Trichormus variabilis V5 NODE_294_length_8168_cov_7.00087_ID_587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 4302 37 100.0 33 ..................................... ATACCTAGATTCCCACCGAATACAATCCAATTG 4372 37 100.0 37 ..................................... AATTCATTAAGCCTAGACGATCTTGTCTGCACTCGAT 4446 37 100.0 44 ..................................... GATGAGCTAATTTCCAATGCCAGTCTTTACGACGGTTGGCGATG 4527 37 100.0 34 ..................................... AGCAATTCTCAAATCAGCCCGCCACAAGCAATTT 4598 37 100.0 35 ..................................... GTCAATTGGTTTAAGTTGTAGCACTCCTATCTTAT 4670 37 100.0 35 ..................................... ATCGCAAGAGATGTAACGCCTAAGAGTAAAAAAGA 4742 37 100.0 36 ..................................... GTAAAAATCATGATTTTTACTATTGAAAAAATCCTG 4815 37 100.0 39 ..................................... CAATTTAACTTATTTGATAGTGATATCTATCGGTATATA 4891 37 100.0 35 ..................................... AAAGAAGTTGCAAGTAGAGCTAATTTAGCAATCAC 4963 37 100.0 41 ..................................... ACTATGTATGGGGGTGAATATTAGTGGCATTTCGTCCACCC 5041 37 100.0 34 ..................................... ACTATTCTCTGCCGCTAAATCAAAAACAGAGCTA 5112 37 100.0 35 ..................................... CAACTTACTGGGACAACCGCAGCAACCACCTTAAT 5184 37 100.0 33 ..................................... GAGTTGGTTCGACTGATAGTTGATTTGAACAAG 5254 37 100.0 33 ..................................... GCACCTGAGATGACGCAAGCAGCAAAGGCAAGC 5324 37 100.0 32 ..................................... AAAGTTGGTTCCGCCATAAAACTGATTTTTGA 5393 37 100.0 34 ..................................... GGGAACGCGCCCTTAAGGTTTATGAAATTGTCTA 5464 37 100.0 33 ..................................... TAAATCGGTCGAGCTAGTAACGCTTCGGCTTGC 5534 37 100.0 34 ..................................... AGTGGTATCTTTGGCACAATCTTCAGGATTGTCG 5605 37 100.0 33 ..................................... CGAGTTACCGCCCCTTTAATCGGTAGGGACAGG 5675 37 100.0 33 ..................................... GGAATCAGGGAAAGGGTTAGGACCTGCAAGATT 5745 37 100.0 35 ..................................... AGCGAATTAACACTTTATTAACCTTCTCTATTTGT 5817 37 100.0 35 ..................................... TAAATTCCTTAGCTAAATCCAATAAGGCCAAGGAA 5889 37 100.0 33 ..................................... TATGGAATCCTGGCAACCTACGGGCTGAGGAAT 5959 37 100.0 36 ..................................... AGAAGACGGGGAGGAGGAGAAATGCAAGCTAAAACG 6032 37 100.0 34 ..................................... CTGGATATTTATCCAAATGCCGATCCTCTATCGA 6103 37 100.0 33 ..................................... AGCTGCGCGACATCGCCAAGTATTACAAAATCC 6173 37 100.0 34 ..................................... CTAGCGATCGCCGCCGCCTTTACCCCTTCTAAAT 6244 37 100.0 36 ..................................... CCTATACAGGGTTCACAAACACTATCCAATCTAGGG 6317 37 100.0 42 ..................................... AAAAAATCCAAAAGGGCATATATCTCTTTGTATCGATTCGAT 6396 37 100.0 34 ..................................... AAGTAAGCCAATACTGAAGTTTTCGTGTTATATT 6467 37 100.0 35 ..................................... CAACCCAGAATCGGCTTATCATACACCAGAGATAA 6539 37 100.0 37 ..................................... TCCTTAATTGACTCTAAAGCACTATATACAATATCAA 6613 37 100.0 34 ..................................... GCAACATTCGTTTCTACAATAATATTGGTGTAGC 6684 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 100.0 35 ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAGATAAACCAATCAAATATCCCCATATGTTCCGTGCTAGTGAGATTATGATTCTCACTAAAACTGATTTGTTACCTTATGTGCAGTTTGATGTGCAGCGTTGTCTAGAATATGTACAGCAAGTAAATCCCAATATGCAGGTTTTCCAAGTTTCTGCAACTACAGGTGTGGGATTAGATACTTGGTATCAATGGCTAACGCAGAAAGTAGCCAATTCTCCACAACCAGTAGTGATGTAAGCAGTAACTTTGCGTCAACCCATAGATGTTTTTCCAAACTTATGAGATTTTCTGCTGGAAAAGCTTATCCCCTATGGGTTTGAAGTGGTTTTGACTCGCTATGAGGTTGACGCAATCACCAAATCTCTTACAGTCACTGATTTCCACATATTTTTTAGGTACTACCTCTTGACAAAGCGATCGCTCAACAGCTACCTTAGTCACAAGTTCACGCAACCGCACCTTGAAAACCAAATATATCAAGCTTTCCATGCCTGAGCC # Right flank : CGTAGGAAAAAATAGATTTGTTGTACTCGCAACATTGAGTTCCAATTAATACAACGCGAATCCTTAGCCCCTAAAATCGAGAAATATTGCAACTCTTCATCAAAAAGCAATAACAAAGCAACAAAACTGTCATAAATGCTATCTAAAGTAATAATAAACATAGTTTCCTCGCTCAAGGCCATGCAAAACCAAGTACACGATGAATCTCAACCCTTAAATCCTAAAAACCAGAATCACGCACCTTGGAAAAAAGCGGCTGCATCTCTATCACTAGTACTGCTGGGATCTGGTATGACTTTAGCTGGTGGATATTTAGCAGGAAACCAGCAACAATTGGCACAAAAAGCATCTGACTTGGCCGTGAGCCGAGTAGATGCAGCACCGCCATTAGGAAATAACACAGACCCCAACTTTGTAACTCAAGTAGTACAGAAAGTTGGGCCGGCTGTTGTGCGTATTGAAGCGTCTCGGACTGTCACATCTCGATTACCAGCCGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 5387-5208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000330.1 Trichormus variabilis V5 NODE_322_length_7744_cov_7.93426_ID_643, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 5386 35 100.0 37 ................................... GGGGGCTGGGTCATCATATTGATCTCGCTCAGTCCGG 5314 35 100.0 37 ................................... ACGATCGCAACCCTTGATTCATGAAATGCTTGGTAGC 5242 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 100.0 38 GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Left flank : TAGGTGAAAGTCGGGATTTAGTGAATGATGTTACCCTTTTACCTAAAAATTACTATGCAGAATCAATGCGATGGTTAATTCGAGATGAATATGGGTTACTAACTTTACCTTACTGGGTAGACCATGTAGGTTCGCGGGGAACGCGATGGCTACGTTACGAGATTCAGAAATGTCCAGTCTTTCAACCACCTGAATTATCTTGGACTTCAGTTCAAAGTAATTAGAGGATATCTTTACTTTTGCAAGCACCTCTGCTTGGGAAATTTAAAAACTATAGAAAGTAGCCTTAATTCGTTATTCTACAAGCCTTTTAAGGATTTTATATGCTTCTAGAGTGCTTGCAATTTCCTGGAATGCTCTAAATACAAGAGTTAGGAGTGTTAAAAACTTTACTTTTGCTATGAATAGCTATTAATTTTTGCAACTTGGCTAACCTTAAAGAGTAGGTGCTTGTAAAATTGATGTAGAGCTTAGGCAAGTCAGCAAATGTGGCTATCGCT # Right flank : GGATTCCCAGAGGCGAATGTATTTACGGGTTATTGTCTTTGCTAGAAATATGTTGTCAGTGAAGCCAAGATTAGCCCTCTTGATTACCATCATTCCGAGAAATTTTACTGAGAATTTTTTCCCACTGCTGAATCTGGTTCTGTATTTGTAATTGGGGATGGGCTTCCCCCCGCCGTAGGCGATCGCTCAAATCTTGACTATCATCAACAGACAAATCCTGACCGCTCAATCGCTCACGGTAAAGAGCAATCAGTTCGGTTAGGGCTTTTTTATTGCTTGATTATCCTCCTGGGTCAGAGAACTCACATTGACTGGGATCAGCTTTCTGCCAATTCTCTCGACAAACTCAGACCGACTTAAATCCATGCTGTCAGCGATCGCATCTAATCCATCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCTCTTCTTTACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCTTTCTTACCCATTGCCGTCTACT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3634-1130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010001032.1 Trichormus variabilis V5 NODE_339_length_7267_cov_9.33547_ID_677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3633 37 100.0 34 ..................................... TTGTGCGTCTTTTAAGTGGGGGATATAAGCGAAT 3562 37 100.0 37 ..................................... ACGGTCAAGGCGAAACCATACTGCACGCCCCTAGTGG 3488 37 100.0 38 ..................................... TAGCGATATCACAATAACTTTACCAGTGGTAACTATTG 3413 37 100.0 33 ..................................... TTTGCTAAAGCAAAGACTCAACAAGAAAGTGCT 3343 37 100.0 36 ..................................... TGAATGGCAAGAACTAAAAACTTATGTTTTTGATAA 3270 37 100.0 35 ..................................... TAAAAACACTTCTCCAACTGGAGGAAGAACCATTA 3198 37 100.0 36 ..................................... ATTAACTGAAGCCGTCCCCAGAGATTTTGTTTAAGC 3125 37 100.0 34 ..................................... TGCGATCGCGTCTCTTAAGACTTCGGACTGGTTT 3054 37 100.0 38 ..................................... CTTCATCACCTCCTTAGCGGTCGATACGTTCTTGTTAA 2979 37 100.0 35 ..................................... CAATAAAAAGACAGGTGTACTTATGACGTTTAGAA 2907 37 100.0 38 ..................................... ATTCTTTGTATTCTCTCAGGATGAATCAGCCTCACCAC 2832 37 100.0 36 ..................................... CTCAGGTATCTTTCCTGAGCGAATCTACGGCGTATA 2759 37 100.0 37 ..................................... AAAAATAGCTGAAGCCGCCAAACGGGGGAATGATGCA 2685 37 100.0 34 ..................................... AACGACCCAGATAAAGCCAGCACAACAACCGCAT 2614 37 100.0 34 ..................................... GAATGGATGATGCTTCTTTGTACCATTTAATGGC 2543 37 100.0 33 ..................................... CTCAGTTGCCACCAAAGAGGCGGGTTTAATTTT 2473 37 97.3 37 ...................A................. TATCGTATTTTTACTATTAATTCTATGCTTTGTTCTG 2399 37 100.0 34 ..................................... TTTGTATACACCCGCCTTCTCTGCCTGTAATCTG 2328 37 100.0 35 ..................................... GTTTTTTTTGTACGAATCCTAGATAAATATTTATT 2256 37 100.0 36 ..................................... TACCCCCTGGCATCCCCCACTGGTTCTTCCCTGGCA 2183 37 100.0 38 ..................................... ATCTTGCTTGGTAAATCGATGCGGCGGAAATTTGCCTT 2108 37 100.0 35 ..................................... AGACGGATACATCGAGTGGGAGCTTAAAAATCCAA 2036 37 100.0 33 ..................................... TACCACGGTAACAAGTCAAGCGATCGCTGCTAA 1966 37 100.0 31 ..................................... CTCCAAGGTGTATACTATCAAGTATTTTTAG 1898 37 100.0 36 ..................................... TGTTCCTGGGTTGGTGGGGAATGCCTTAGTATTTTC 1825 37 100.0 38 ..................................... GCATCTTGGGTGGCATTTGCACCAAAAACTTGAGTTAG 1750 37 100.0 36 ..................................... CAGGTATAGAAACACCTGTAGTATAGGTTTTACTAG 1677 37 100.0 38 ..................................... GCCAACCAACTTGCCACACTCAGGGATCGTTCTGCTCA 1602 37 100.0 36 ..................................... ACCTAAAGAAGCTTTAAACGAGATTGTGAAAAAATA 1529 37 100.0 34 ..................................... AAAAACTTGCAGAATGGAAAAACCGCCAGCGCGA 1458 37 100.0 33 ..................................... AAGTTTTCCATTTAAGTGCTAAAGCAATAACAA 1388 37 100.0 34 ..................................... TAGTTATACAGAGATTATCAAAAGCCCCTGCATA 1317 37 100.0 38 ..................................... TAACTACTCTAAATAGTGAAGCTGTAAAAACTTCAGGA 1242 37 100.0 39 ..................................... TTAACAAAGATGGAAAGAAAACAAATACTTTCCATGTAA 1166 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 99.9 36 GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Left flank : GCTATTGTCACACTTGCCAGTAACTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTCAACCAGTTGGTACAATTACAGTTATTAAAATGTGACCAAGCCCAAGGGTATTTGTTCTCAAAACCCTTAAGTAGCGACAAAGTTAGCTTGTTATTAGCTGCAAAAACACAATATTAGAACACAAAATCTTGGCTTATCCGCCATATTCAGTTTGGAATCAGAAAATTTTACGGAAACAACGAGCGATCGCGTCAACCTATAGGTGTTTTCCCGTTAATCTCAATTTTTATAGCTTAATGCCTTATCCTCTATACATTTGAACGCAGTTGACCTCTTTCCTGGGTTGACGCAACTCCTGAAAGCCTTGCTATGACTAATTTCTAGTATTTATTCTTATTGTTCCTCTTGACAACCCAATGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCGGCAACTAGTC # Right flank : AACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTGTGCGTGATAGAAATCATGCCGCATTGCATTGATGCAACGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTACATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATGACATATTGATGTGGTGCAAAACCAGTTGATTGCTTAAATTGGCGCGAAAAATAATACATACTCATTCCTACTGCTGTGGAAATATCAACCAAAGTCAAATCTTGATCAAGATTTTCATGAATGTAGGAAATTGCTTGTCTGAGTTTCCAATGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATGGTTCCACCTGTTACACAATAGTGTTTGAGTAGGTGAATACAAAGCGTGGTCGTCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 17653-19722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000167.1 Trichormus variabilis V5 NODE_43_length_21672_cov_8.34207_ID_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 17653 37 100.0 35 ..................................... TCTCTGCGGCAAACAGTGCCTATGCTGCGGGCGGG 17725 37 100.0 38 ..................................... TATATATTTCTCTATCGCAGACAATCTTCTGTTAATGC 17800 37 100.0 40 ..................................... ATTCCTATCGTGATTGAACTGACTATCAACGTGAGGACTG 17877 37 100.0 36 ..................................... CCTAACTTACAACGCCCCACTAATTCACAATATTTG 17950 37 100.0 39 ..................................... GATAGAGATGATTGGTCGAGGGGAAATATCTCTGGCCAA 18026 37 100.0 44 ..................................... CACTTTAGACGAAACTAAAATATATAGCGATTGTACAAGTCAAG 18107 37 100.0 35 ..................................... CTAAAACAGTTCCCTCAAGAGTGTTCCCAATCAAT 18179 37 100.0 37 ..................................... TTAATTTTGATGTTCCTTGGACGTGGTTTTAATTCGG 18253 37 100.0 33 ..................................... CTTGCATTTTGATAAAAAAGATAAGTAGAGTAA 18323 37 100.0 35 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCCTCAGTT 18395 37 100.0 35 ..................................... GGCAGATAGTGGATGGGGCGGTAGATGTTCGGCAA 18467 37 100.0 33 ..................................... TACTCGCGATCGCTGCATCCTCAACGCCCAAAA 18537 37 100.0 35 ..................................... GTGGCTGGGACTAGAAGGGCTAGCCGAATCACTGG 18609 37 100.0 35 ..................................... TGGCAATACACGGGAGTAGATGATACTTCTGAGGA 18681 37 100.0 35 ..................................... ATCCAGTAGCAGTTCGCCCTCATCATTCCAGTAAG 18753 37 100.0 34 ..................................... CGGCGGCGCTGCGGCTGGTGGCGTACTCACAGAT 18824 37 100.0 36 ..................................... CTTGCCATTTTGACCTTCCATATTGAACACCCCAAT 18897 37 100.0 32 ..................................... ACCTCAGTTGCTCTGTTCTTGATTCCGCACAG 18966 37 100.0 34 ..................................... ATTTTAAAATCGGTGCAACCGGAGTTCGGCTCAA 19037 37 100.0 34 ..................................... GAGAGGCAGATCACCTTGTTCTATTAAGTGAGCG 19108 37 100.0 38 ..................................... AAAAGATGTCGATCAAATGAAGCGGATAAATAGCCACA 19183 37 100.0 37 ..................................... TAAGAAGGAGAGGTGATGTTAATTCACTTAGTGGAAC 19257 37 100.0 35 ..................................... AAAGACTTTTTAGCCGAGACGCAGGCAGGAAGAAG 19329 37 100.0 33 ..................................... AGCTTCAACGGCGGCGGGACTAGCTACATTCCC 19399 37 100.0 33 ..................................... AAAAGAAATTTAGCGACTTCTGCATTCTGTTCG 19469 37 100.0 35 ..................................... GCGTAAACTCTTCCGCCCTTAAATTGCGAGAAAAG 19541 37 100.0 34 ..................................... GGAAGCGTCGCTAAAACTCAAGCTATTTTAGAAA 19612 37 97.3 37 ....................................C GTGCTAGCCCTCTAATCTCTGGTATCCATCGCCCCAG 19686 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================================ ================== 29 37 99.8 36 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAGGTTCTTAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGCCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATCGGCGGCGAAATGCCAATAGACACTACCGTATTTTTTGCTTAACTCGTGCGTCAACCTATAGGTGTTGGGCAAACAAACTAAAATTTATCGTCCCAAACCCTTACCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCTTCACCATAAATACTTTTGCACCAATTTTCTCCAACTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTTCAGACCTGGACA # Right flank : CCTAATAAAATTGTTTTTTCTAGCAAGTCGCCTGAGGTTTATATTATAGGGTTTTTTAGTCTGCTGAAGTAAAAATCTCTGCGTACCTCTGCGCTTTACTCCGCGCCCCTCTGCGTTTCAAAATATTATCTGTACCTCACTTAACTGGAAATCGCTATAACACAAATCTCCATAGCATTTCCTAGCTGCTGAGGTACAAATTTATCCGCGTACCCTGCGGGAAGACTTCGTCAATATCTGTGTCCATCTGCGTTTAATTATTGTCATTTGTAATTCATTAGGATAAGAAAAACTATATTAAGGATTGAAACAATAGAGTTGGGATTTGCTCCGTAGGTTGCGTTAGTTTCTATTAATACAAATCCCTATCAAGGCTCTCAAATCTGTCAACAGCTATACCTTACTCTCTTTGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTTTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 3855-2246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000886.1 Trichormus variabilis V5 NODE_597_length_3855_cov_7.8883_ID_1193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3854 37 100.0 33 ..................................... ACGCAAAAGGCAGCTATGTAAAGTCTGCTACGA 3784 37 100.0 34 ..................................... TACTTTCTTGCGTAAGTTGAAATACGAAACATCA 3713 37 100.0 35 ..................................... AACGTTATGATGGGTCTGGCAGTTCTTCTTCTGGG 3641 37 100.0 36 ..................................... ATATATGATAAATGGGCTGAGAGTAACGGTGAACTA 3568 37 100.0 38 ..................................... CGGGGAAGCTATCTCAATACAGGAGAAAAAGTTCATCC 3493 37 100.0 34 ..................................... ATTTTGAAGCTTAAATTTTACGCCGGAGGGTAAT 3422 37 100.0 36 ..................................... ACTCTCAAAAAGAGTACGCTTTTTTAATTCAACAAA 3349 37 100.0 35 ..................................... CCTGCTTTGCATCTTCATTTAGTAGTCGTTTGTGA 3277 37 100.0 33 ..................................... TAACTCGGACGACTTACGCATGGTAACTTTGGC 3207 37 100.0 34 ..................................... CAAACCCTATGTTTCTAAAGTTAATCCCTTTGTG 3136 37 100.0 34 ..................................... TCCGACCAAGAACCGCCAACTTCTCCGTAATCTG 3065 37 100.0 34 ..................................... TTCATTGTGTTAATCGCTAGCCACTGAAAATCAT 2994 37 100.0 35 ..................................... GTAATTATCGACGTTAATACCGTCGTGTATAACGA 2922 37 100.0 34 ..................................... AGAGCATCTGAAGGCTGAAAGTATAGCCAAAGCC 2851 37 100.0 37 ..................................... AAGAATCCTAAAGAACGCCAGAAAGCAAAGATTACCG 2777 37 100.0 34 ..................................... CGAAACGGATATTTTGTTAACAAATCCTGACCTA 2706 37 100.0 33 ..................................... GATGCTAAAGGCAAGGTTAAATCCCTATATCGT 2636 37 100.0 32 ..................................... ACTGGTGCATATCCATGTTTCTCTGCTATATC 2567 37 100.0 34 ..................................... TGGGCGAGAAAGCTTGATGATTTTCTAGAAATAT 2496 37 100.0 34 ..................................... TTCTTCCCAGTATGAAAAGCCAATGGCGGAAACG 2425 37 100.0 33 ..................................... CACGTATTACCAACAGCACAAAGACCGCATAAA 2355 37 100.0 36 ..................................... CCAATATATCTGAATATTGTTTCTTAACCGTATTAT 2282 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ====================================== ================== 23 37 99.8 34 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Left flank : | # Right flank : GATTCTGCTGCGTAAGTACTCTCAACAACAACCCTGACTTTGCGGAAAACCCAACAGGGTAGCCAAAGCAATACCTAAAGGCGATCGCCCAAAATATCTACTCATTCTTTTTGTGTAGAAAATTAAACCACTTACTTCTAGGCAACTAATCAAAGCGCGAGTATAAAAGAAAAAACAAACACAAATTAATACCTGAAATTAACAGAGAAATAACATGGCAAATCGCTCGCGCAAGCTAACGCCAAAATCTTCTAAGCAAAATGGCTCTGATTTGGAAGCGAAGAAACCTCAAATCCAGCAACAACAGGTAGGTAATACCGATTTGCCAAAAGAAGGTGATGGAGGAATTAATCAAACCCAGATACAGAAAGCGATTTCTCCATCAAAATCCTATAAACCATCCTCAATAATTGCGATCGCCATTTTACTTACAAGTGCTGGCTTAGTGCTGAGTTGTACCTGGATTGGAATTCTGTGGATATTTAACCCAGAACAGGTAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 1473-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000662.1 Trichormus variabilis V5 NODE_616_length_3567_cov_8.13811_ID_1231, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1472 37 100.0 35 ..................................... TTAAAGACTGTACTTCATAGGAGATTTGAGATAAA 1400 37 100.0 34 ..................................... AAGTGTACAGGCAATAGTTATTCCTATCGTGATT 1329 37 100.0 34 ..................................... CTGACGCTGTAAATAAACGCGCTGGTAATCCTGG 1258 37 100.0 34 ..................................... GCGAGACTTGCAATCATCTGGTAGCTCATCTGAA 1187 37 100.0 32 ..................................... ATCATTAGGGGTGAAAACTATATATAAAGTTG 1118 37 100.0 37 ..................................... GTAATCAGTTGAGTACCCAGTTGGAGGCGCTGCGGTG 1044 37 100.0 35 ..................................... GAGTACACTAGGTACTAAAACAATCCACCACCGAT 972 37 100.0 35 ..................................... TTCTTGGAGACTTAGACGACTCCATAACATTACTG 900 37 100.0 34 ..................................... AGGGGAAAAATGTTTTTCCCTGCTTAGTGATAGG 829 37 100.0 34 ..................................... GTCCGCGGGTTTAGATTTGTACTGAAATTCCACG 758 37 100.0 32 ..................................... TTTCCCATCGTAGATAAATAGTACCTATGTTA 689 37 100.0 33 ..................................... TACTCAATAGCTGAACAAGCCTCAACAAAGACA 619 37 100.0 34 ..................................... ACATGATTGATAGTCTTTGTTGGCTTCAGATTGT 548 37 100.0 34 ..................................... AAAACTAGTGCCTTGCAGCATAGCCGTGAAAGAG 477 37 100.0 35 ..................................... CGCCGATTACTCAGCAACCAATATCTCAGTCAAGT 405 37 100.0 37 ..................................... TTTCTGAGCTTCAATTTGAGCTATTTGATCACGTAGA 331 37 100.0 33 ..................................... AGAGAATCAACATATTGCTGACACCCACACAAA 261 37 100.0 33 ..................................... GAGTATTTTAATTAAAAATGAACTTAATTAGAG 191 37 100.0 36 ..................................... AATCCCTCTGCACCACCTGGAATAACCTTAACCCTT 118 37 100.0 34 ..................................... TAAAGAGGAAAGGATTGTAACTGTACCTGCTTTA 47 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 100.0 34 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCCCTTTGGCAGAAAAGGGGATTTATTTGGTTTTCTCTACGGCTTACCACCAAAATTAAACAACGGCGTATTAATACCCACCGCAGATACTGGCAATTCCACTCACTACGAAGTTTTTTACCGCTATTTAGTCAACGACAACATCGCCATTACCCCTGGCTTTTTTCTCGTCACCGACCCTGGTCATATTTCCAGCAACAATGATATTTTCATCGGTGCTATCCGTACCACCTTTAATTTTTAAAATATTGCGTCAACCCATAGATGTTTTTCTGCACAGCTTCAGTTTTTTGCCTCTATGCCTCATCCTGATTAGGTTGCAGCCCATAACATTAAAATTGGGGTTGACGCAATTACCTCTAACCTTCGCCATAACAGCTTTTGAGTTAATTTTTACCATACGCTTCTTGACAATCCCATGTCTGAAAAGTTATCTTGGCTCCATGTTGACGCAACTGAACCTTGAAAACCAAATACACCAAAGCTTTGAGAGCCAAGCG # Right flank : CACGCAAAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 9399-9148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZL010000056.1 Trichormus variabilis V5 NODE_75_length_17283_cov_8.98617_ID_149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 9398 37 100.0 34 ..................................... GCTTCACACATTGCCAAAGACAATAGACGTAGCA 9327 37 100.0 35 ..................................... CGATATGCTAATAAATACAACCTATGCCATAGAAG 9255 37 100.0 33 ..................................... GTGTTACTCCTTAAATCTGGATTTAAGCCACAG 9185 37 86.5 0 ........GA........A.A...............T | G [9158] ========== ====== ====== ====== ===================================== =================================== ================== 4 37 96.6 34 GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Left flank : AAAGCGCGAGATTTAGCGATCGCAGCTTACTATTTACGCCAAAATAAATCTTAATTTTTGATTAAGCAAATATACTGAACCTTGACAATAAAATAAGTAATAGCGCCGCAGTTCATGTTAAACCTCTGAACTGTGAAAAATCTGGGTTAGGTTGACTATTGGAAAATAGTCCTGCTTTCTGACCCTGGTAGCTGCTCACCCCGATGCTGCTGTTTCCGAACAGGAATTAGGTGCGCTCCCAGCAATAAGGGCGCGGATATACTGCTGTAGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCATACCAATCCTTGTTTCCAGGCATTAGAAGAGATTAAAAATTTTCAGTCGATTCGCGCTTGCTTGCTGTGAAAGGATTTTAGCGTTTAATGGCACAAAAATTGCTCATTCAAACGGCAGTTGAAGAAGCTAGGAATATAGATCCGCGCTATCAACTCTGGAATCCTCCACAAAACAAGGATTCTATACAGGAAGG # Right flank : AATTATGTATGTATTCATCTCCATTAGGATGGGTGAGAGTGATAATAACCATTCACGAAAGAATGGATTGAAAATGTAATACCTAACGATAAACAGAAATAGGCAAGTTATATAAATCTTTCCGGTGCAGGACTGGTTGAAATATAAAGATTACAAGATGTGGGTATGGGTTGAAAGGGTTCAAATCCGTCTGCTTAACTTTTGCTGCCAAGCATAGTGGTTAGAATAATTGTGTGCGAAATAAAGAACAAAAGTTTTTTGTTTAACCAAGGTATAGCAAAAGTTTTTAGAGCTTGAGCTAAAATTGAGCTTATGGTCTTCTATTTGATAGGACTGATGTTGACCAATCACCCCACACAATCGATTAGTCTCAAATATTGCGACATTAATTTGTGAACGGTTATCTTAAATGAGCCGCGACACTAATTAGTGAAACAGCGACATTAATGTGTGAACGGCGACATCTAATGTGTGAATGTACAACAAGCTAAGAGCTTCTT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //