Array 1 210887-210062 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQD01000001.1 Moraxella ovis strain NCTC11969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 210886 32 100.0 34 ................................ GTTTTGTTGGAACAGCTAGACGAAAGGCTAGATG 210820 32 100.0 34 ................................ ACTTAAATTAACCCCATCTTTTTTGCGTACCCAT 210754 32 100.0 32 ................................ TATTTATTTATACTATATATATATAATAATAA 210690 32 100.0 35 ................................ TGCTATCCTGCCTCCCAACCCGCAAAACCCCTTAT 210623 32 100.0 35 ................................ TTGGCTAATGCTGTCATCTTGAGGGTAGGCATATA 210556 32 100.0 34 ................................ ATTTGCTCTAATTGCTTGGCGTTTTGCTTTGGAT 210490 32 100.0 34 ................................ CGCTGTTATCTAACAAGTTATTTTACGAACGGTG 210424 32 100.0 34 ................................ GCTGAACTGGGTAGAGATGACTACCCCTTACCAG 210358 32 100.0 34 ................................ CACAATAACCCGCCGATAAATTGGTAGGGGTTGC 210292 32 100.0 35 ................................ GGTAATCTCACTTATGGCGGCAGCTACTGCGTGTA 210225 32 100.0 34 ................................ ACGAGTAACAACTTTAATATCAACGTTTTCTAGC 210159 32 96.9 34 ............A................... GTCGTCATCGGCACAAAAAATCAGCCAATTTTGT 210093 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 99.8 34 ATCGCACCCCATGCGGGTGCGTGTGTTGAAAC # Left flank : GATGATGAGATATGTTAATGTTAATCAGTTATGATGTGGCGATGGATGACGGCGGGCAAAAGCGCCTAAGGCACATCGCCAAACATTGCCAAGATTATGGCGTGCGAGTGCAGTATTCGGTGTTTGAGTGCGACATCATGCCCGACCAATGGGTGGTATTAAAAGACAAGCTATTAAAGGCGTACGACCCTGACAAGGACAGTTTGCGGTTTTATCATTTGGGCAGTAAATGGCGTGGCAAAGTGGAACATCATGGGGCAAAAAAGAGTGTGGATTTGTTTCAAGATACGCTGATATTGTGATAAAAAAGAGGTAAATCGTGGCTCGCTAACGGGCAGTTCTCATCAAAATACAGGCAGGTTAGCGATGAGCTAAGTTTTTGAATTATTTAACAATTGAAAATAAAAACAAGTTCATTTATAATCAATGGCCTTTTTAAGGCTTAGGTTAGCGATTTTACCCATTCTAAGCCTTAAAGATATAGCCTTTAAACAAAGGCT # Right flank : TCAATATCTTAATCTGATTCAAAAGTCCTATCGGGATTGGAATAGGCAAGGCAATAATTCACTTGATTTTTCTTCATCTTTTGTTTGATTTATTTTTCTATTTTACTGGATTATTTTCTAAGTTAATGCCTGTGCAATAAGAGGGGTTAAATCGTTGTATCTAAGTTTTTAATAATCACCATTATAAGAGCGGCAAACAAGTGATTTTATTTAGCTTAATTTAAGAAATGCTTTGTTGTTTTTTAAGTGTTTGCTTTAAGTTGATGGTCATATTGAAGTCGTATGCAAGGCATACTATAATGTGACCTCTTAAAACATATATTGATTGCAAGGTTAGATCATGATAAAAATCGGTCAAGGCATAGATGTTCACGCTTTTACGACAGGCGATTTTGTAACGCTTGGCGGTGTGCGTATTCCTCACACGCACGGCATTAAGGCTCACTCAGATGGTGATGTGTTGTTGCACGCTTTGGCGGATGCACTGCTCGGAGCGTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACCCCATGCGGGTGCGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1224516-1225056 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQD01000001.1 Moraxella ovis strain NCTC11969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1224516 36 100.0 27 .................................... TTTAGTGTTAAATAGTTTTATTTGTTT 1224579 36 100.0 26 .................................... TCAGCACACCACATAACTGCATATGT 1224641 36 100.0 26 .................................... TCCGTTGTAGTTTAATAATTTTTAAC 1224703 36 100.0 28 .................................... TAATAGCCACAACTAACAAGCGTTATAA 1224767 36 100.0 27 .................................... CGTGGATTCACGTCACGTCATATTTAT 1224830 36 100.0 28 .................................... ATAAGGTAGGCATATCATACCCCCACTT 1224894 36 100.0 27 .................................... TTTATAATATATATAATATAATAATAA 1224957 36 100.0 27 .................................... GTGTCTATTGATTTTAATTCCCAGACT 1225020 36 88.9 0 ..............................T.TA.G | C [1225049] ========== ====== ====== ====== ==================================== ============================ ================== 9 36 98.8 27 GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Left flank : TTCGTTTTGATGTTGCCAAGTTTTGACATGCAAGCAAATGGAGGAGATGTATGATAATCGTCAGTTATGATATCAGTGATAATAAAGTGCGTGGACGATTTGCCAAATTTTTAATGCAATATGGCGATAGATTGCAATATTCGGTGTATGAAATCCAAAACAGCGAACGCATTTTAAATATCATCACCGAAAAAATAAAAGCAGAATTTGAGCCTTTATTTACAGGGGCGGACAGTGTCATTATCTTTCGATTTACAGAACGTGAAGTATTAAGGTTTGGCCATGCCAAACATCGCAATGAGGATTTGTTGATTTTATAAAAAGTCTTGGAAAAAATGATGAGGTTTGTTATAATAAGAGAGCTAAAGCACGCTCAAATATTTACTTTGCAAACCTCAGTCTTAATGCGTGATTTATCATGTTTTGTTGGTAAAAATGATTATTTTTTGTGCGAAAAACTTGCTAATCTCTCAAAAAATCATTAAAAATACCCCAAAACG # Right flank : GGCATGAGAATTTAAATGGCTGCGAAGATCAAAAGGCATTATTTCATTAAAATCCCAAAATCACAGATTTATTTTTCTAGAACACTTGTATCTTACGAATTATGATTTATAATATTAACTTATACATATATTACTAGGATTTATAATCGTGAGTACTACGCTGCGCCAGTTGCGCGCTTTTGTGTTGGTAGCTGAGCAGAACAGCTTCACCAAGGCCGCTGAGACATTATGCCTGACGCAATCCGCCTTAAGCGGTCTGATCAAGGAGCTTGAGCAGAATTTAGACGTTAAGCTGTTCGACCGCACCACACGAAAATTGCACCTATCCGATGCGGGCATGCGCTTATTGCCGCAGGCGCGCCGTGTGCTCAATGAGATGTCCGTGCTTAATGAAAAGGTCTCCAACCTAAAGTCCTTGCACCAAGGACACATTCGTCTGGCGGTCTCGCAGCAGCTATCCGCATCGACGATGCCTAAGTTCATCGCTAAGTTCTGTGAGC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //