Array 1 786543-786978 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483379.1 Streptococcus pyogenes strain NCTC10874 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    786543	    36	 100.0	    30	....................................	TACGGAAGATGAGGGTTTAATACCACTATT 	
    786609	    36	 100.0	    30	....................................	ATATAGTCATCCGCTCTGATAGGTGTTGTT 	
    786675	    36	 100.0	    30	....................................	AAGAGATTGAGCAAAATGCGGAGCAAGCAA 	
    786741	    36	 100.0	    30	....................................	AAGCACACATATTATTATCGCTGCTGAGGA 	
    786807	    36	 100.0	    31	....................................	TCATGCAATCCACAGGCCTATTTGATAAAAA	
    786874	    36	  97.2	    30	.......................G............	TAGAGTAAACCGAATCTTTGCCATCTCTGG 	
    786940	    36	  94.4	     0	..................C.............C...	|                              	T,TT [786969,786973]
==========	======	======	======	====================================	===============================	==================
         7	    36	  98.8	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                               	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  CATTGCCAATGGTAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTCTTTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAGACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGGAGGTATTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGGCGT

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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