Array 1 31612-33739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQJT010000025.1 Pseudomonas aeruginosa strain ZYPA43 NODE_25_length_79846_cov_29.813445_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31612 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 31672 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 31732 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 31792 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 31852 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 31912 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 31972 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 32032 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 32092 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 32152 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 32212 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 32272 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 32332 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 32392 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 32452 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 32512 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 32572 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 32632 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 32692 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 32752 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 32812 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 32872 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 32932 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 32992 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 33052 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 33112 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 33172 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 33232 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 33292 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 33352 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 33412 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 33472 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 33532 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 33592 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 33652 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 33712 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43312-42264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQJT010000025.1 Pseudomonas aeruginosa strain ZYPA43 NODE_25_length_79846_cov_29.813445_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43311 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 43251 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 43191 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 43131 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 43071 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 43011 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 42951 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 42891 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 42831 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 42771 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 42711 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 42651 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 42591 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 42531 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 42471 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 42411 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 42351 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 42291 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //