Array 1 481573-482515 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMJ02000002.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA 39 strain SGSC 2219 CFSAN000446_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 481573 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 481634 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 481695 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 481756 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 481817 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 481878 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 481939 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 482000 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 482061 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 482122 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 482183 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 482244 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 482305 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 482366 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 482427 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 482488 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 498774-499943 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMJ02000002.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA 39 strain SGSC 2219 CFSAN000446_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 498774 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 498835 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 498896 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 498957 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 499018 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 499079 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 499140 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 499201 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 499262 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 499365 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 499426 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 499487 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 499548 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 499609 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 499670 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 499731 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 499792 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 499853 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 499914 29 96.6 0 A............................ | A [499940] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //